PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY48047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 260aa MW: 29072.8 Da PI: 8.5668 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 101 | 155 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q +Le+ F++++++s ++++ LA+kl+L rqV vWFqNrRa+ k GAY48047.1 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.5e-38 | 101 | 189 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k q ++LE++F+e+++L+p++K+ la++L+l+prqv+vWFqnrRAR k+kq+E+++e Lkr++++lk+en+rL++ev+eL++ GAY48047.1 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKS 189 69*************************************************************************************94 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MEFDDSTCLG LGIQGALPQS DDHDHQKKNG KKLILKDDQL LPSLTLGRRS ENTLKSATKE 60 KESTDVLQQA SCMSMSMSAL SSISNSKGIR DHHEDEGGSP RKKLRLTKPQ FATLEDTFKE 120 HSTLSPKQKQ GLAEKLNLRP RQVEVWFQNR RARSKLKQTE VECELLKRCC EKLKDENKRL 180 QREVQELKSM KLSGAPLYMK LPAPTLTVCP SCDEKLDGGD GRDVYGDGYG DGDGSSTSRS 240 SFTFGSKHLY NSFTHPSAFC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 158 | RRARSKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 7e-60 | HD-ZIP family protein |