PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48026.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 427aa MW: 46518 Da PI: 5.3111

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48026.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.2e-10	268	316	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq GAY48026.1 268 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 316 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MGAGDNDDMG FQPRNESAMN CSSGMIPQKL PGMQMNSVPM YKSVSGPDHF YGSGWEPIVS 60 LNQGESFGVS SMVSHNEFAP SYPVALENQG MSSTSNLDQY SSDPSFVELV PKIPGFGSGN 120 FSEMVSSFGL PENAQIASSG CPPNYVPNKE GCYERNSRNV SQSYEDHQIC EEAAIVVATN 180 GKTRKRAPES NSLLNTDKNV EVELQKDPSG DSSGILKEQD EKKQKIEQNT GANMRGKQAA 240 KPTKDSSLSG EAPKEYIHMR AKRGQATNSH SLAERVRREK ISERMRLLQE LVPGCNKITG 300 KAVMLDEIIN YVQSLQQQVE FLSMKLATVN PELNLDIERI LSKDILHARS GSAATIGFSS 360 GMNSSRPYPP GIFQGTMPSI PGANPQFPPL PQSVLDHEFQ SLFQMGYDST SAVDSLGPNG 420 KWQVTTT

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MGAGDNDDMG FQPRNESAMN CSSGMIPQKL PGMQMNSVPM YKSVSGPDHF YGSGWEPIVS  60
LNQGESFGVS SMVSHNEFAP SYPVALENQG MSSTSNLDQY SSDPSFVELV PKIPGFGSGN  120
FSEMVSSFGL PENAQIASSG CPPNYVPNKE GCYERNSRNV SQSYEDHQIC EEAAIVVATN  180
GKTRKRAPES NSLLNTDKNV EVELQKDPSG DSSGILKEQD EKKQKIEQNT GANMRGKQAA  240
KPTKDSSLSG EAPKEYIHMR AKRGQATNSH SLAERVRREK ISERMRLLQE LVPGCNKITG  300
KAVMLDEIIN YVQSLQQQVE FLSMKLATVN PELNLDIERI LSKDILHARS GSAATIGFSS  360
GMNSSRPYPP GIFQGTMPSI PGANPQFPPL PQSVLDHEFQ SLFQMGYDST SAVDSLGPNG  420
KWQVTTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	5e-82	bHLH family protein