PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47169.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 458aa MW: 52201.1 Da PI: 6.3588

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.5	6.6e-22	124	220	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+a+ ++++ + +kk++W+ vsk m +rg+++sp+qC++k+++lnkrykk++++ +k+ t++++++ ++ d + GAY47169.1 124 KWTDNVVRLLIAAVACVGDDGTIDGveglkrksgilQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGlTCQVVENPALIDTM 220 7************888888865444556667888******************************************99**999988877 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MDNSSGLGGR FLSGQNVGLL DLESSIPRNQ QNQLGHPSFS RPHQMNMMHG LENDHHHIGL 60 LEVKGSSRKG LPMNFGRGKM VSPINASNNG NTSEEDEPSY TDEGNGENSN GGRDKKGSMW 120 HRMKWTDNVV RLLIAAVACV GDDGTIDGVE GLKRKSGILQ KKGKWKTVSK IMISRGCQVS 180 PQQCEDKFND LNKRYKKLND ILGKGLTCQV VENPALIDTM SCSHLSAKAK DDVRKILGSK 240 HLFYKEMFAY HNGKKIPNCH DIDLQGCSVP SDRSPKGNDE SEEEEADRNN DTDDDESDNE 300 DDRNDDEDEG RMAEIGERGK GNEEDGHSWP QSAGRSVFEM EMARIFQDPS KSMWERREWI 360 KKQKLALQNQ RVSIQAQAFE LEKQHLKWLR YCSKKDRELE RSRLENERIR LDNEQMILHL 420 KQKQFELDLR KTEVSLEPTS LGNRDRDRDQ IDDLGRHQ

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MDNSSGLGGR FLSGQNVGLL DLESSIPRNQ QNQLGHPSFS RPHQMNMMHG LENDHHHIGL  60
LEVKGSSRKG LPMNFGRGKM VSPINASNNG NTSEEDEPSY TDEGNGENSN GGRDKKGSMW  120
HRMKWTDNVV RLLIAAVACV GDDGTIDGVE GLKRKSGILQ KKGKWKTVSK IMISRGCQVS  180
PQQCEDKFND LNKRYKKLND ILGKGLTCQV VENPALIDTM SCSHLSAKAK DDVRKILGSK  240
HLFYKEMFAY HNGKKIPNCH DIDLQGCSVP SDRSPKGNDE SEEEEADRNN DTDDDESDNE  300
DDRNDDEDEG RMAEIGERGK GNEEDGHSWP QSAGRSVFEM EMARIFQDPS KSMWERREWI  360
KKQKLALQNQ RVSIQAQAFE LEKQHLKWLR YCSKKDRELE RSRLENERIR LDNEQMILHL  420
KQKQFELDLR KTEVSLEPTS LGNRDRDRDQ IDDLGRHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-64	Trihelix family protein