PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46728.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 32301.7 Da PI: 4.5993

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.1e-20	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAkklgL+ rqV vWFqNrRa++k GAY46728.1 65 KKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 56789************************************************9 PP
2	HD-ZIP_I/II	134.8	3e-43	64	155	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFe+e+kLeperK +la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++ydal ++ ++L ke+++L++e+ GAY46728.1 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVV 155 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MESGRLFFDR SSCPGNMLFL GNGDSFFGGA RSMMSMEETS KRRPFFSSPD DLFDDCYYDE 60 QLPEKKRRLT AEQVHLLEKS FEAENKLEPE RKGQLAKKLG LQPRQVAVWF QNRRARWKTK 120 QLERDYDLLK SSYDALLSSY DSLVKENQKL KSEVVSLNEK IEAKEEESKE AKSDKKTETH 180 HQPTEVTNNI CGIQLQLSNN KTEDRLSSGC SGESAVVDED GPQRVVDTGD SYFGCMDPVV 240 DAAQSEEDGG SDDGRSYFSD VLVVAPDHVS NQQHEEPLGW WVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-73	HD-ZIP family protein