PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45818.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 415aa MW: 47070.3 Da PI: 5.7557

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.1e-14	210	261	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ +++Lr+l+P+a + ++ + a+i A++++k+L+ GAY45818.1 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 261 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MEKLQGPINP YFLGDHLSVE CFEQEFINTG ALRFEFEEED EEGPQFTTTP SLEDKMPFLQ 60 MLQSVGTPSV FPFKEPNFQT LLRLQHLKKP WELVSPFMPE MEETQIQALE FESCVTQETL 120 DLHSPVKLET KDLQNPHSVT SCIEGLSSES NQEHIQVQPN SDSVINITHP PQQQIRAKQS 180 QFSKSPPITR EKRKRKRTKP IKNKEEVESQ RMTHIAVERN RRRQMNDHLN TLRSLMPPAY 240 VQRGDQASII GGAIDFVKEL EQLLQSLEAQ KRMRMGTTSA ATLEGCDSAT STTTTTTTTD 300 KAILSNVYSM SRPEIGNCEE KMKAESKLDG AEIEVIVIHN HVNLKIHSPR RPGQLLKAIV 360 ALEDLRLTFL HLNITSSETT VHYSFNLKIE EDCKLGSAEE IAAAVHQIFS YINGS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MEKLQGPINP YFLGDHLSVE CFEQEFINTG ALRFEFEEED EEGPQFTTTP SLEDKMPFLQ  60
MLQSVGTPSV FPFKEPNFQT LLRLQHLKKP WELVSPFMPE MEETQIQALE FESCVTQETL  120
DLHSPVKLET KDLQNPHSVT SCIEGLSSES NQEHIQVQPN SDSVINITHP PQQQIRAKQS  180
QFSKSPPITR EKRKRKRTKP IKNKEEVESQ RMTHIAVERN RRRQMNDHLN TLRSLMPPAY  240
VQRGDQASII GGAIDFVKEL EQLLQSLEAQ KRMRMGTTSA ATLEGCDSAT STTTTTTTTD  300
KAILSNVYSM SRPEIGNCEE KMKAESKLDG AEIEVIVIHN HVNLKIHSPR RPGQLLKAIV  360
ALEDLRLTFL HLNITSSETT VHYSFNLKIE EDCKLGSAEE IAAAVHQIFS YINGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	200	RKRKRTKP
2	211	222	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	6e-68	bHLH family protein