PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY45784.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 515aa MW: 57126.2 Da PI: 5.3875

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY45784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	343	388	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L GAY45784.1 343 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIREL 388 799*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MEDLIISPSS SSSLVSLTPE TPPPTLQQRL QFIVQSQPEW WAYAIFWQTI SNDDNGQLFL 60 AWGDGHYQGT KDASPRARIS MPAPAPGAAL DNNMERKRAI SSIRGIQQSF MGHEMDLSMM 120 DGGDVTDTEW FYVMSLTRSF GAGVGIPGRA QSSGSLVWLT GSHELQFYNC ERAKEAQSHG 180 IETFVCIPTS CGVLELGSSD LIRENWGLVH QVKSLFGSVL ITKPLNPNPT PAAPPMHFLD 240 RNISFADIGI IAGVQQEQEE EEEEEEELSR PEEEDQNKVK KPRKDQGCTV KSSTGQSSYT 300 VDSEHSDSDC PLPPPVNNIS AVEKRTPKKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY 360 ALRAVVPNVS RMDKASLLSD AVSYIRELKV KIDDLESQLL QRESKKVKLE ISDNHSTTTS 420 VDQARPSSAG SGGGFNLEVE TKIMGSDAMI RVQSENVNHP AAKLMSSLRD LDLQLHHASM 480 SCVNDLMLQD IVVRVPDGLR TEDALRSALL RRLDQ

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MEDLIISPSS SSSLVSLTPE TPPPTLQQRL QFIVQSQPEW WAYAIFWQTI SNDDNGQLFL  60
AWGDGHYQGT KDASPRARIS MPAPAPGAAL DNNMERKRAI SSIRGIQQSF MGHEMDLSMM  120
DGGDVTDTEW FYVMSLTRSF GAGVGIPGRA QSSGSLVWLT GSHELQFYNC ERAKEAQSHG  180
IETFVCIPTS CGVLELGSSD LIRENWGLVH QVKSLFGSVL ITKPLNPNPT PAAPPMHFLD  240
RNISFADIGI IAGVQQEQEE EEEEEEELSR PEEEDQNKVK KPRKDQGCTV KSSTGQSSYT  300
VDSEHSDSDC PLPPPVNNIS AVEKRTPKKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY  360
ALRAVVPNVS RMDKASLLSD AVSYIRELKV KIDDLESQLL QRESKKVKLE ISDNHSTTTS  420
VDQARPSSAG SGGGFNLEVE TKIMGSDAMI RVQSENVNHP AAKLMSSLRD LDLQLHHASM  480
SCVNDLMLQD IVVRVPDGLR TEDALRSALL RRLDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	3e-50	bHLH family protein