PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44840.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 450aa MW: 50464.4 Da PI: 5.2274

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	146.9	1.9e-45	219	449	1	232
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal....klfsevsPilkfs 94 lv+lLl++Ae v +++e+a++lL+r + +a+ +++p+qR+++ f+ AL++r+ r +++ ++k + ++ +++ + ++ P++++ GAY44840.1 219 LVHLLLAAAEKVGYQQFERASRLLSRCEWTAAARANPVQRIVFNFAAALRERIDReTGNFTAKEELGGIGNGMTLIDHGLGInpvfLTCYQRLPFHQVV 317 68***************************************************22222222222222222333333222122224489999** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +lt qa+ e v +++++Hi+Df+i G+QW +L+qaLa+R++ p l++T+v+ g+kee+e tg+ La+fAe+l++pf+f+v+ ++++ +++ + GAY44840.1 318 YLTGAQAMIENVGNASKIHILDFEIRCGVQWTSLMQALAEREQRPIqLLKLTAVAF---GNKEEVEVTGKSLASFAESLNLPFQFSVVCVTNFLEIKEQ 413 **************************************6655499***...89***********************9****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232 ++++++E+l+V + l+l ++ + + +le+ +L ++k GAY44840.1 414 LFEIRNDESLIVYCPLMLRKMISCPSCLEN----LLGVIK 449 *******************977777777....888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MANILFSSTS SFDFSEIQGR YSDILEDYHK DEAGIEQNQK QNQMFSMDGL GEISPPLCSQ 60 LGAYQEENSA KKVPTLLEEQ RHLLQQNKSN DLLLNELHAN FVFQTSHSPE MPKLKDVQTS 120 HDQEIKPVKE PFALSSLELL SNYAGGFKKL KGNLSGSYTR NESNAGGSKK LSTEDILRVA 180 GARYVHFFDQ SYDDLSMVMH PFGYGLPGLS EEETRDVELV HLLLAAAEKV GYQQFERASR 240 LLSRCEWTAA ARANPVQRIV FNFAAALRER IDRETGNFTA KEELGGIGNG MTLIDHGLGI 300 NPVFLTCYQR LPFHQVVYLT GAQAMIENVG NASKIHILDF EIRCGVQWTS LMQALAEREQ 360 RPIQLLKLTA VAFGNKEEVE VTGKSLASFA ESLNLPFQFS VVCVTNFLEI KEQLFEIRND 420 ESLIVYCPLM LRKMISCPSC LENLLGVIKS

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MANILFSSTS SFDFSEIQGR YSDILEDYHK DEAGIEQNQK QNQMFSMDGL GEISPPLCSQ  60
LGAYQEENSA KKVPTLLEEQ RHLLQQNKSN DLLLNELHAN FVFQTSHSPE MPKLKDVQTS  120
HDQEIKPVKE PFALSSLELL SNYAGGFKKL KGNLSGSYTR NESNAGGSKK LSTEDILRVA  180
GARYVHFFDQ SYDDLSMVMH PFGYGLPGLS EEETRDVELV HLLLAAAEKV GYQQFERASR  240
LLSRCEWTAA ARANPVQRIV FNFAAALRER IDRETGNFTA KEELGGIGNG MTLIDHGLGI  300
NPVFLTCYQR LPFHQVVYLT GAQAMIENVG NASKIHILDF EIRCGVQWTS LMQALAEREQ  360
RPIQLLKLTA VAFGNKEEVE VTGKSLASFA ESLNLPFQFS VVCVTNFLEI KEQLFEIRND  420
ESLIVYCPLM LRKMISCPSC LENLLGVIKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	3e-22	GRAS family protein