PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41854.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 31964.7 Da PI: 8.2273

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.7e-18	130	184	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k GAY41854.1 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP
2	HD-ZIP_I/II	125.5	2.5e-40	130	218	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + GAY41854.1 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-S 218 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGEKDDGLGL SLSLGCAARN EPSLRLNHMP LSSSQSMQNH HKRSPWTELF HSSDRNSDTR 60 SFLRGIDVNQ APTVADCEEE NGVSSPNSTV SSISGKRSER EPIGDETEAE RASCSRGSDD 120 EDGGAGDASR KKLRLSKEQS LLLEETFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEYLKRCCE NLTEENRRLQ KEVQELRSLK LSPQLYMNMN PPTTLTMCPS 240 CERVAVSSSS SSSSAAANGT TRLPIGPNHQ RLTPVSPWAA LPIHHRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	SRKKLRL
2	179	187	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	8e-84	HD-ZIP family protein