PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41694.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 574aa MW: 63398.7 Da PI: 6.2012

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.8	1.2e-24	118	219	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+ltpsd+++ g +++p+ +a+++ ++ + ++++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ ++s++++ GAY41694.1 118 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqVDPPVQ--NISVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKFVNRKKLIAGDSVVFM--RDSRGKM 212 89*******************999996444445..6999*****************************************..5689999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ GAY41694.1 213 YIGLRRS 219 *9986 PP
2	Auxin_resp	81.2	2.3e-27	249	330	3	83
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++a + +FevvY+Pra++++F+v++e v +a++v +++GmR+km +etedss+ ++ +Gtv++ s d W +S+W +L+ GAY41694.1 249 ERAVLGLPFEVVYYPRAGWADFIVRAEVVDSAMRVFWTAGMRVKMVVETEDSSRMTWiQGTVTAASMPDRGPWCGSPWGMLE 330 56667889**********************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MPSQQPYSPA EPRAVDPRIW RACAGSSVQI PSVNSRVYYF PQGHVEQSCP SITLSVTKPF 60 IPCLITHVEF LADPVTDQVF AKVVLNPITA LEPSRNFLEQ QPRGLSIGDV EENNVVAFAK 120 ILTPSDANNG GGFSVPRFCA DSIFPPLNYQ VDPPVQNISV TDIHGAVWEF RHIYRGTPRR 180 HLLTTGWSKF VNRKKLIAGD SVVFMRDSRG KMYIGLRRSV RYGKNGDSAG ARWREQTGMK 240 AEAVAVAVER AVLGLPFEVV YYPRAGWADF IVRAEVVDSA MRVFWTAGMR VKMVVETEDS 300 SRMTWIQGTV TAASMPDRGP WCGSPWGMLE VTWDEPEILQ NAKRVSPWQI EFVSPTQPLH 360 TAFPPAKRLK FSPNYGSMTD VEEEIFFPVN GLSNSTVGCL NPSLLNYNTF PAGMQGARQN 420 PYSLFSLSNF ISENNHQMSS DGIFGNNMVP KLRRVSTELN IGSSQSDNLS PDSHSSVHSF 480 GTELGGNQGC NSTKVGVRSI QLFGKIIHMK QPVESGFGDV VCPDDDGSKG FSEREDVNLP 540 LDLSLTYTEL LNRFGIQGRG SEVEDEVVAE ACSL

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MPSQQPYSPA EPRAVDPRIW RACAGSSVQI PSVNSRVYYF PQGHVEQSCP SITLSVTKPF  60
IPCLITHVEF LADPVTDQVF AKVVLNPITA LEPSRNFLEQ QPRGLSIGDV EENNVVAFAK  120
ILTPSDANNG GGFSVPRFCA DSIFPPLNYQ VDPPVQNISV TDIHGAVWEF RHIYRGTPRR  180
HLLTTGWSKF VNRKKLIAGD SVVFMRDSRG KMYIGLRRSV RYGKNGDSAG ARWREQTGMK  240
AEAVAVAVER AVLGLPFEVV YYPRAGWADF IVRAEVVDSA MRVFWTAGMR VKMVVETEDS  300
SRMTWIQGTV TAASMPDRGP WCGSPWGMLE VTWDEPEILQ NAKRVSPWQI EFVSPTQPLH  360
TAFPPAKRLK FSPNYGSMTD VEEEIFFPVN GLSNSTVGCL NPSLLNYNTF PAGMQGARQN  420
PYSLFSLSNF ISENNHQMSS DGIFGNNMVP KLRRVSTELN IGSSQSDNLS PDSHSSVHSF  480
GTELGGNQGC NSTKVGVRSI QLFGKIIHMK QPVESGFGDV VCPDDDGSKG FSEREDVNLP  540
LDLSLTYTEL LNRFGIQGRG SEVEDEVVAE ACSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	0.0	ARF family protein