PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41560.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 264aa MW: 30296.8 Da PI: 5.1266

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t q+++Le+ Fe ++++ +++ +LA++lgL+ rq+ vWFqNrRa+ k GAY41560.1 57 KKRRLTVVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 56689***********************************************98 PP
2	HD-ZIP_I/II	121.8	3.4e-39	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy Lk++ydal+ + ++L++e+e+L++el+e GAY41560.1 56 EKKRRLTVVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRE 148 69***************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MKRFSSSDSF DALITVYKSA DKTSTKRKQI YGREFQAMMD CLEEEDCREE ASQATEKKRR 60 LTVVQVKALE KNFEVDNKLE PDRKVKLAEE LGLQPRQIAV WFQNRRARLK SKELERDYGL 120 LKANYDALRL DYNNLQQENE ALTAELRELK AKLCQENEET SHAVEAEAPV SEQSKNHVSS 180 ENANAQLLTS PPSFSSLFTG SSSSSHPSMN WVQFSDSRTI LSNVYQQPQL VKVEEQSLLF 240 NPEDPCNIFS VDQAPTLQWY FTGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	86	KKRRLTVVQVKALEKNFEVDNKLEPDRKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	8e-52	HD-ZIP family protein