PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41212.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 618aa MW: 68822.9 Da PI: 7.5014

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.8	6.6e-22	95	150	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k GAY41212.1 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 79999************************************************999 PP
2	START	68.5	1.9e-22	263	383	63	168
HHHCCCGG...CT-TT-S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS START 63 eellddke...qWdetla....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146 +++++++ +W e+++ + +t++v+ s galq+mvae+q+lsplvp R f+R+++q+ +g+w++vdvS+d +++ + ++ + GAY41212.1 263 GSMMQTSLefnRWAEMFPcmiaRSATTDVLLSPsvtgtknGALQVMVAEFQVLSPLVPvRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYR 361 566666667779****9999888888876667999999********************************************98889999999 PP ESSEEEEEEEECTCEEEEEEEE CS START 147 llpSgiliepksnghskvtwve 168 +lpSg+++++++n++skv ++ GAY41212.1 362 RLPSGFVVQDVPNNYSKVSNYD 383 ***************97665 PP
3	START	38.3	3.3e-13	419	461	164	206
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtw+eh++++++++h l r+l++sg+ +ga +wvatlqrqce+ GAY41212.1 419 VTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 461 8****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MSFGSNSVGM GSRVVAEIFP HCHSMASGAI AQFPLSLSIK NAMDAGEMGL IGEQFDPSVV 60 GRIREEEFES RSGSDNVEGA SGDDQEANED GPPRKKKYHR HTPHQIQELE SFFKECPHPD 120 EKQRSELSRR LGLESKQIKF WFQNRRTQMK TQMERHENII LRQEHDKLRA ENEMLKDAMK 180 NPTCNNCGGP AVPGSVSNYE LQQLRIENAR LKDELGRICI LANKFLGRPL TSSAGPISPQ 240 GVNSSLELGV GRNGFGGVAN IPGSMMQTSL EFNRWAEMFP CMIARSATTD VLLSPSVTGT 300 KNGALQVMVA EFQVLSPLVP VRQAKFLRFC KQHIEGVWAV VDVSIDTNRE GLSADPFQTY 360 RRLPSGFVVQ DVPNNYSKVS NYDKNDNLEI GHFLFEMKSL LSLDLMFAFF IANSLILMVT 420 WIEHAEYDES IVHHLCRPLL SSGMGFGAPK WVATLQRQCE CLAVLMSSTM TVQDQSGISP 480 IGRKSMLKLA QRMTYNFCSG VCASSVRKWD KLCVGNVGED VRVLTRKNVN DPGEPPGVVL 540 CAATTVWLPM TRQRLFDFMR DERMRSEWDI LSNGGPLQEM VHIAKGQAPG NCASLLRAGV 600 SGHQLILSNH RLMIINLI

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MSFGSNSVGM GSRVVAEIFP HCHSMASGAI AQFPLSLSIK NAMDAGEMGL IGEQFDPSVV  60
GRIREEEFES RSGSDNVEGA SGDDQEANED GPPRKKKYHR HTPHQIQELE SFFKECPHPD  120
EKQRSELSRR LGLESKQIKF WFQNRRTQMK TQMERHENII LRQEHDKLRA ENEMLKDAMK  180
NPTCNNCGGP AVPGSVSNYE LQQLRIENAR LKDELGRICI LANKFLGRPL TSSAGPISPQ  240
GVNSSLELGV GRNGFGGVAN IPGSMMQTSL EFNRWAEMFP CMIARSATTD VLLSPSVTGT  300
KNGALQVMVA EFQVLSPLVP VRQAKFLRFC KQHIEGVWAV VDVSIDTNRE GLSADPFQTY  360
RRLPSGFVVQ DVPNNYSKVS NYDKNDNLEI GHFLFEMKSL LSLDLMFAFF IANSLILMVT  420
WIEHAEYDES IVHHLCRPLL SSGMGFGAPK WVATLQRQCE CLAVLMSSTM TVQDQSGISP  480
IGRKSMLKLA QRMTYNFCSG VCASSVRKWD KLCVGNVGED VRVLTRKNVN DPGEPPGVVL  540
CAATTVWLPM TRQRLFDFMR DERMRSEWDI LSNGGPLQEM VHIAKGQAPG NCASLLRAGV  600
SGHQLILSNH RLMIINLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52170.1	1e-177	HD-ZIP family protein