PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39119.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 593aa MW: 66624.1 Da PI: 5.97

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.8e-11	439	486	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + Err R ++N++f L++++P+ K +K++iL ++eY+++L+ GAY39119.1 439 TNHVKSERRQRGKLNERFVILKSMVPSV-----SKFDKVSILDDTIEYVQELE 486 6899*********************6.....5**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MDTTKIQNQK RVPESLKKQL ALAVRSIQWS YAIFWTISDT QPGVLEWGDG YYNGDIKTRK 60 TIQSVELSSN QLGLQRSEQL RELYESLSAG ESHPQAASKR PSAALSPEDL TDTEWYYLVC 120 MSFVFNIGEG LPGRALANNQ PIWLCNAHYA DSKVFSRSLL AKTVVCFPHL HGVVELGVTE 180 LVLEEPDFIQ HIKTSFMEIP CPMISGNSSS GAGNMRDDKD LACAALCSQN LDTTMVPVVG 240 YEVLEMASPD NNGSSGIKHN QPADYSFMVE GINGVASQVQ SWQVMDDEFS NCVHSVNSSD 300 SISQTLVDAT KCVSASKDDK KIGHCLQEVE ECNPTELTSL DPQGHDLHYQ SVLSSLLKTS 360 HQLVSRPHFQ NHSQESSFAS WKKGGLVSCK KQRDGVSQKL LKKILFEVPR IINYRLLESS 420 EDNHIKDDVS RLEAEETATN HVKSERRQRG KLNERFVILK SMVPSVSKFD KVSILDDTIE 480 YVQELERKVK ELESCRAKLE ANYDNSKTSR AKKRKSRDIY ESEPEFERFA TADNINVSIN 540 EKDVQIEIKC PWREGMLLEI MDAISNLHLY SHSVQSSTNR GILSLTIKSE VRT

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MDTTKIQNQK RVPESLKKQL ALAVRSIQWS YAIFWTISDT QPGVLEWGDG YYNGDIKTRK  60
TIQSVELSSN QLGLQRSEQL RELYESLSAG ESHPQAASKR PSAALSPEDL TDTEWYYLVC  120
MSFVFNIGEG LPGRALANNQ PIWLCNAHYA DSKVFSRSLL AKTVVCFPHL HGVVELGVTE  180
LVLEEPDFIQ HIKTSFMEIP CPMISGNSSS GAGNMRDDKD LACAALCSQN LDTTMVPVVG  240
YEVLEMASPD NNGSSGIKHN QPADYSFMVE GINGVASQVQ SWQVMDDEFS NCVHSVNSSD  300
SISQTLVDAT KCVSASKDDK KIGHCLQEVE ECNPTELTSL DPQGHDLHYQ SVLSSLLKTS  360
HQLVSRPHFQ NHSQESSFAS WKKGGLVSCK KQRDGVSQKL LKKILFEVPR IINYRLLESS  420
EDNHIKDDVS RLEAEETATN HVKSERRQRG KLNERFVILK SMVPSVSKFD KVSILDDTIE  480
YVQELERKVK ELESCRAKLE ANYDNSKTSR AKKRKSRDIY ESEPEFERFA TADNINVSIN  540
EKDVQIEIKC PWREGMLLEI MDAISNLHLY SHSVQSSTNR GILSLTIKSE VRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	403	KKQRDGVSQKLLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-176	bHLH family protein