PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39010.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 340aa MW: 38310.2 Da PI: 4.576

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	100	153	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k GAY39010.1 100 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 153 56689************************************************9 PP
2	HD-ZIP_I/II	128.3	3.3e-41	99	190	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+ GAY39010.1 99 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 190 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MAGGRMYNQN SSSGGGSGGG TSSLSFLIQS QKGSCSNSQN LDASFLSGPS PSPFLGSRSM 60 VSFEDVHLAN GSNNRPFFRP FDRDENGDED FDEYFHQPEK KRRLTVDQVQ FLEKSFEVEN 120 KLEPERKIQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLQNSYNS LKADYDNLFK 180 EKEKLKAEVL KLTDKLQVKE KESKNTELPV VNKTLSQEPP QISEPVADSA ASEGKVCKAS 240 VVACKQEDIS SAKSDIFDSD SPHYTDGVHS SLLETCDSSY VFEPEQSDLS QDEDDSLSKN 300 VLLPPYVFPK LEETEYSDPP TNSCNFGFPI EDHAFWSWSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-45	HD-ZIP family protein