PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38824.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 473aa MW: 55153.4 Da PI: 9.4989

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.9	3.6e-25	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n++ rqvtfskRr+g++KKA+ELS+LCdaev + ifsst klye+s+ GAY38824.1 10 KINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFSN 59 79**********************************************95 PP
2	SRF-TF	74	1.2e-23	222	267	6	51
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + n qvtfskRr+g++KKA+ELS+LCdaev ++ifsst klye++s GAY38824.1 222 DQNLQVTFSKRRKGLIKKAKELSILCDAEVGLVIFSSTSKLYEFAS 267 6789****************************************86 PP
3	K-box	70.7	4.7e-24	83	170	11	98
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +q+e+a L++++++Lq+++R+l+Ge+L Ls+k+Lq+Le+qLe l+ +R kK+++l+++i+el +k + +q e +L+kkl GAY38824.1 83 PSEVKFWQREVAVLRQQLQTLQENHRRLMGEQLYGLSVKDLQNLENQLEMTLRGVRLKKEQILTDEIQELNRKGHLIQLESLELNKKL 170 57889******************************************************************************99997 PP
4	K-box	76.6	6.5e-26	292	378	12	98
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +++e+a L++++++Lq+++R+l+Ge+L Ls+k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k +q+en +L kk+ GAY38824.1 292 SELKFWRREAAVLRQQLQSLQENHRQLMGEQLYGLSVKDLQNLENQLEMSLRGVRLKKEQMLIDEIQELTQKGSLIQKENLELCKKI 378 67899******************************************************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MGRGKIVIQK INNSTSRQVT FSKRRKGLIK KAKELSILCD AEVGLAIFSS TAKLYEFSNT 60 SMKAVIERYN QLKEENEQLL NPPSEVKFWQ REVAVLRQQL QTLQENHRRL MGEQLYGLSV 120 KDLQNLENQL EMTLRGVRLK KEQILTDEIQ ELNRKGHLIQ LESLELNKKL NLIRQENIEL 180 YRKAYSTKDE NEEGGNASIP YALNNEEEDS HVPIHLQLSQ PDQNLQVTFS KRRKGLIKKA 240 KELSILCDAE VGLVIFSSTS KLYEFASTSM KAVIERYNCL KEEHEQLLNP PSELKFWRRE 300 AAVLRQQLQS LQENHRQLMG EQLYGLSVKD LQNLENQLEM SLRGVRLKKE QMLIDEIQEL 360 TQKGSLIQKE NLELCKKINL IHQENMELYG KVYGTRDANE AGGNAFVQYG LNNGEVSQLP 420 INLRLSQPNQ KKHLFYNFEK KKKRSMLKNL HFRIDPIIDY LKLLYYVKEY RGC

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MGRGKIVIQK INNSTSRQVT FSKRRKGLIK KAKELSILCD AEVGLAIFSS TAKLYEFSNT  60
SMKAVIERYN QLKEENEQLL NPPSEVKFWQ REVAVLRQQL QTLQENHRRL MGEQLYGLSV  120
KDLQNLENQL EMTLRGVRLK KEQILTDEIQ ELNRKGHLIQ LESLELNKKL NLIRQENIEL  180
YRKAYSTKDE NEEGGNASIP YALNNEEEDS HVPIHLQLSQ PDQNLQVTFS KRRKGLIKKA  240
KELSILCDAE VGLVIFSSTS KLYEFASTSM KAVIERYNCL KEEHEQLLNP PSELKFWRRE  300
AAVLRQQLQS LQENHRQLMG EQLYGLSVKD LQNLENQLEM SLRGVRLKKE QMLIDEIQEL  360
TQKGSLIQKE NLELCKKINL IHQENMELYG KVYGTRDANE AGGNAFVQYG LNNGEVSQLP  420
INLRLSQPNQ KKHLFYNFEK KKKRSMLKNL HFRIDPIIDY LKLLYYVKEY RGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	5e-91	MIKC_MADS family protein