PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38782.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 484aa MW: 54411.1 Da PI: 9.2205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	315	377	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 ++h+e+ErrRR riN+ +++Lr++lP+++ ++ ++Ka++L k+++ +++Lq GAY38782.1 315 KKHSEAERRRRLRINDQYDNLRKILPNLVkvnnastkllVIVKQQVDKASVLAKTIKTVRELQ 377 68***********************999***99888888*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MESRPELASH CKKEDKGKNV YNEIEPKKTH LSGNDDGCKN NEKGAQENAE NKENNDKNET 60 FWTVCPYCYY MYEYEKAFEE FCLRCQNCRR AFHGVAVVEP NKNMLVEGRD EYYSGLGYFV 120 LKYSLKRSKK KKESGDEGKT YNVGEVVEIS DDSDEDDGGG VNVKSGNGAK EDVLKGNVKG 180 VMQESGNTEV INEEKRVVAR KNVKSVPRNS KKVMGRGMKI RKIDGGSVRA SGTGETDLEF 240 IEKDGDVYRQ IGVATMVLLQ QLERGVKPVQ SYYNSMAYLK QLSLTQGSIS SNIICYPSLI 300 SKPISKVEAK ELAAKKHSEA ERRRRLRIND QYDNLRKILP NLVKVNNAST KLLVIVKQQV 360 DKASVLAKTI KTVRELQRTV REQKALCQVH EECVFPSEAN ELSLRNCNRD RGMLKVTLSC 420 EDQPELMSDL SRALRSVKGR LVRAEMVPVG GRIKCVLWVQ GNNRMKDMLF GAGGFVGVAV 480 SVIQ

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MESRPELASH CKKEDKGKNV YNEIEPKKTH LSGNDDGCKN NEKGAQENAE NKENNDKNET  60
FWTVCPYCYY MYEYEKAFEE FCLRCQNCRR AFHGVAVVEP NKNMLVEGRD EYYSGLGYFV  120
LKYSLKRSKK KKESGDEGKT YNVGEVVEIS DDSDEDDGGG VNVKSGNGAK EDVLKGNVKG  180
VMQESGNTEV INEEKRVVAR KNVKSVPRNS KKVMGRGMKI RKIDGGSVRA SGTGETDLEF  240
IEKDGDVYRQ IGVATMVLLQ QLERGVKPVQ SYYNSMAYLK QLSLTQGSIS SNIICYPSLI  300
SKPISKVEAK ELAAKKHSEA ERRRRLRIND QYDNLRKILP NLVKVNNAST KLLVIVKQQV  360
DKASVLAKTI KTVRELQRTV REQKALCQVH EECVFPSEAN ELSLRNCNRD RGMLKVTLSC  420
EDQPELMSDL SRALRSVKGR LVRAEMVPVG GRIKCVLWVQ GNNRMKDMLF GAGGFVGVAV  480
SVIQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	KRSKKKK
2	127	133	RSKKKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	7e-40	bHLH family protein