PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY38368.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 902aa    MW: 98950 Da    PI: 6.548
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY38368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-182987357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GAY38368.1 29 KYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                5679*****************************************************97 PP
2START1593.7e-501673752205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l +++ 
  GAY38368.1 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGnaGTIELLYTQA 264
                 7899******************************************************.7777777777*****************99*********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + ++
  GAY38368.1 265 YAPTTLAPaRDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNpasAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQ 363
                 **********************************988888878999***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 +++ a+l++ ++
  GAY38368.1 364 RMTIAALRYVRQ 375
                 *******98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    
MAMVIQQQQQ QQRESSSGSI NKHQLDNGKY VRYTAEQVEA LERVYSECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS  120
QLVCENGYMK QQLRTAPATT DASCDSVVTT PQHSLRDANN PAGLLSIAEE TLAEFLSKAT  180
GTAVDWVQMP GMKPGPDSVG IFAISQSCSG VAARACGLVS LEPTKIAEIL KDRPSWFRDC  240
RSLEVFTMFP AGNAGTIELL YTQAYAPTTL APARDFWTLR YTTTLDNGSL VVCERSLSGS  300
GAGPNPASAA QFVRAEMLPS GCLIRPCDGG GSIIHIVDHL NLEAWSVPEV LRPLYESSKV  360
VAQRMTIAAL RYVRQIAQET SGEVVYGLGR QPAVLRTFSQ RLSRGFNDAV NGFNDDGWSL  420
MTCDGAEDVI IAVNSTKSLS TASNPTNSLA FLGGILCAKA SMLLQNVPPA LLVRFLREHR  480
SEWADFNVDA YSAASLKAGS YAYPGMRPTR FTGSQIIMPL GHTIEHEELL EVIRLEGHSL  540
AQEDAFVSRD IHLLQICSGV DENAVGACSE LVFAPIDEMF PDDGPLLPSG FRIIPLDSKT  600
VGFNFTALDL NLSYLFRSIG ACPDTPDTLT AHRTLDLTSS LEVGPATNPA AGDSSSCHHT  660
RSVLTIAFQF PFESNLQDNV ATMARQYVRS VISSVQRVAM AICPSGLSPT LGPKLSPGSP  720
EALTLAHWIC QSYSYHLGAE LLRSDSVGGD SVLKNLWQHS DAILCCSLKI PLTLSDTKRC  780
VYYIFSNASS LMLQSMPVFI FANQAGLDML ETTLVALQDI TLDKIFDESG RKALCADFAK  840
LMQQRGKPQK DVKGFTYLPA GICMSTMGRH VSYEQAVAWK VLAPEDNTVH CLAFSFINWS  900
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein