PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37888.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 388aa MW: 43018.1 Da PI: 8.7825

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	147	170	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F +++L++H++ H GAY37888.1 147 FPCTACGEIFQKPHLLEQHQSIkH 170 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MAKTTVSIGS FFYKFLSLFL LLLHLGCFIF PSNNNPSPTR KKRKASPLSP SPYSPSRLKT 60 KPHKALSSSW SYLKRIFSNS KTLKPSLSQT SSTSSTSNII SSARSSQHSL VPPDHQIHLS 120 DIPPSVLESD ISAADHNPFF PLRNDIFPCT ACGEIFQKPH LLEQHQSIKH AVSELIDGDS 180 GKNIVNIIFK TGWSNKERNP EIHRILKIHN SSKILSRFEE YRELVKTKAA RNGAVRKRDE 240 RCIADGNELL RFYCSTFVCD LGQSGNSSIC NQTYCSVCGI IKSGFSPKLD GISTLSSSWR 300 AHVAIPEEIE EEFKFMNLKR AMLVCRVVAG RVGCDADDDV DMAKENGGFD SVVGRGAGGV 360 NSRVDDDEEL LVFNPRAVLP CFVIVYTV

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MAKTTVSIGS FFYKFLSLFL LLLHLGCFIF PSNNNPSPTR KKRKASPLSP SPYSPSRLKT  60
KPHKALSSSW SYLKRIFSNS KTLKPSLSQT SSTSSTSNII SSARSSQHSL VPPDHQIHLS  120
DIPPSVLESD ISAADHNPFF PLRNDIFPCT ACGEIFQKPH LLEQHQSIKH AVSELIDGDS  180
GKNIVNIIFK TGWSNKERNP EIHRILKIHN SSKILSRFEE YRELVKTKAA RNGAVRKRDE  240
RCIADGNELL RFYCSTFVCD LGQSGNSSIC NQTYCSVCGI IKSGFSPKLD GISTLSSSWR  300
AHVAIPEEIE EEFKFMNLKR AMLVCRVVAG RVGCDADDDV DMAKENGGFD SVVGRGAGGV  360
NSRVDDDEEL LVFNPRAVLP CFVIVYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-107	C2H2 family protein