PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37619.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 676aa MW: 75442 Da PI: 5.8871

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.2	3.1e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l GAY37619.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKSQL 220 99***************************954.5444.38**********************************************..4567778 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ GAY37619.1 221 LLGIRRA 227 9999997 PP
2	Auxin_resp	124.3	8.3e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++++sdldp+rW+nS+Wr+L+ GAY37619.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MKPPANGFLP SSAEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 NDFIPNYPNL PSKLICMLHS VTLHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVARD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITSISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS LWETEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDATSSI FPGLSLVQWM 420 SMQQNNQFPA AQSGFFPSMQ NFSLPTYCLD GDTQSHPRNS LPFVANIDGM APDTLLSRGY 480 DSQKDLHNLL SNYGGTPRDI ETELSTAAIS SQSFAVPNIP FKPACSNEVG INEAGVLGNG 540 LWANQTQRMR TFTKVQKRGS VGRSIDVTRY KGYDELRHDL ARMFGIEGQL EDPQSSDWKL 600 VYVDHENDIL LVGDDPWDEF VSCVQSIKIL SSAEVQQMSL DGDLGNLPVP NQACSGSDSG 660 NAWRHYDDNS AASFNR

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MKPPANGFLP SSAEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
NDFIPNYPNL PSKLICMLHS VTLHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVARD LHDTTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITSISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS LWETEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDATSSI FPGLSLVQWM  420
SMQQNNQFPA AQSGFFPSMQ NFSLPTYCLD GDTQSHPRNS LPFVANIDGM APDTLLSRGY  480
DSQKDLHNLL SNYGGTPRDI ETELSTAAIS SQSFAVPNIP FKPACSNEVG INEAGVLGNG  540
LWANQTQRMR TFTKVQKRGS VGRSIDVTRY KGYDELRHDL ARMFGIEGQL EDPQSSDWKL  600
VYVDHENDIL LVGDDPWDEF VSCVQSIKIL SSAEVQQMSL DGDLGNLPVP NQACSGSDSG  660
NAWRHYDDNS AASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein