PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36954.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 427aa MW: 46964.2 Da PI: 8.0915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.7e-11	360	405	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + ae+L +Ave+Ik+Lq GAY36954.1 360 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ 405 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MSLLYTPNFK YPEGDLRKNQ EFMDSSAHYD QQNNQLSDSS LTRYRSAPSS FLESLVNSNS 60 GGGNCEDYRY FRPSSPEIDN FLAKYMLPCN GSGDSGSHAS QEFGVKAMKQ EEPEPITEQN 120 EYSNGSSQMV YQNLPVHSVG NDISVNVGNA MDNSYGVASS MALENSMQER MATGNGSNLT 180 RQNSSPAGLF SNLGVDNGFA GMRNGGCFRA CNGTNLEAST SASRLINRVN LSPGSSSRFM 240 PQITETGNQS MGNSSPEKNL VGNNGASRQY VSNFPSDPWD DASFSGVKRA RDSTCNMSFG 300 LDAYETQNGN SGNQSTRLVH HLSLPKTSAE MAAVEKFLHF QGSVPCKIRA KRGCATHPRS 360 IAERVRRTRI SERMRKLQDL FPNMDKQTNT AEMLDLAVEH IKDLQKQVKL LTDKKAKCMC 420 PNKQKLC

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MSLLYTPNFK YPEGDLRKNQ EFMDSSAHYD QQNNQLSDSS LTRYRSAPSS FLESLVNSNS  60
GGGNCEDYRY FRPSSPEIDN FLAKYMLPCN GSGDSGSHAS QEFGVKAMKQ EEPEPITEQN  120
EYSNGSSQMV YQNLPVHSVG NDISVNVGNA MDNSYGVASS MALENSMQER MATGNGSNLT  180
RQNSSPAGLF SNLGVDNGFA GMRNGGCFRA CNGTNLEAST SASRLINRVN LSPGSSSRFM  240
PQITETGNQS MGNSSPEKNL VGNNGASRQY VSNFPSDPWD DASFSGVKRA RDSTCNMSFG  300
LDAYETQNGN SGNQSTRLVH HLSLPKTSAE MAAVEKFLHF QGSVPCKIRA KRGCATHPRS  360
IAERVRRTRI SERMRKLQDL FPNMDKQTNT AEMLDLAVEH IKDLQKQVKL LTDKKAKCMC  420
PNKQKLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	7e-72	bHLH family protein