PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36557.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 303aa MW: 34353.4 Da PI: 5.1463

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	92	145	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ + GAY36557.1 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 45689***********************************************99 PP
2	HD-ZIP_I/II	119.6	1.6e-38	92	181	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR ++++lEkdy++Lk+ yd+lk++ ++L ke++ L++e+ GAY36557.1 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLEKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181 9**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MKRKAMAACG NSVGGSQNVG TLLRNEKLPF YSELLDSFWL SKSPTSLQGP QSKANFENVG 60 EGGAARAPPF QSLDNEDNAY VDFDGWLGQS GKKRRLTATQ VQFLERNFEV ENKLEPERKV 120 QLAKELGLQP RQVAIWFQNR RARSRNQRLE KDYDSLKAVY DKLKDDYDNL LKEKQVLQNE 180 VLSLKDKLLL KEKGKENLET FDAVTLLVAE PQKPVTSAET KTLFSSVPVV TCKQEDANSA 240 KSDVFDADSP HYTDGNHLSL IDPPDSSHYL LKLEDSCCYD DPPTNSRNFG FSLEDQLFWS 300 WPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-31	HD-ZIP family protein