PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY34645.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 268aa    MW: 30059.6 Da    PI: 7.0007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY34645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.6e-3612108196
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                 aCaaCk++rrkC++dCv+ pyfp +q+++f+ vhk+FG+sn++k++k+l++ + r++a++s+ +eA ++ +dPv+G +g ++kl+++ e l +  ++
  GAY34645.1  12 ACAACKHQRRKCTQDCVFPPYFPGNQSEEFQLVHKIFGVSNLSKIIKNLETPQdRQEAVESIKWEAAMWEQDPVHGPLGAYRKLEREFEALMKMKNQ 108
                 7************************************************66555*********************************9998765444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MANNGELGNR YACAACKHQR RKCTQDCVFP PYFPGNQSEE FQLVHKIFGV SNLSKIIKNL  60
ETPQDRQEAV ESIKWEAAMW EQDPVHGPLG AYRKLEREFE ALMKMKNQQT SQQIIDYGRG  120
PVMTTSGLIS YPTFQQEQAH VINSNEAPHA FIDQKFNTFG QPSDADHNRS GPTMVGHSYN  180
SPINDNNLVQ IMEQQGPRAR QRRGIATSGD MAINDGQLPR VGGECYDGVT SYYAPTLPSS  240
SHSQLSGPYA QLPYLHININ GFAPRREI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-27LBD family protein