PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34409.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 472aa MW: 52393.4 Da PI: 10.3548

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.7e-08	8	41	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W t+E++ll av ++G+++W+++a+++ gRt GAY34409.1 8 VWGTWEELLLGGAVLRHGTRDWNLVAAELR-GRTV 41 6*****************************.6653 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MGAEVIEVWG TWEELLLGGA VLRHGTRDWN LVAAELRGRT VCPYTVTPEM CKAHYEDLQQ 60 RFYGCKAWFE ELRKQRMAEL KRALELSENS IGSLESKLET LKAERGDDCQ VDNDCSQTES 120 PVPCQKSDAV VCSSKETSKD GLSAGSFTRE TRTHWSPVTQ IPAAVAAEEM ETKTEGLLSS 180 EQGKVSSSEK ITAIVCGGQV GSLKKRRGKR KRKDCSRDVK EGSVGESDFL GVPDAKPVSR 240 RKENSTPVSG QFARSSGADD QSGSLRKDSI DDIKGVFESV AQNESAFVFR HRLDSQKRGR 300 YKKMILRHMD VDTIRSKISS HSIMSIKELF RDLLLLANNA VVFYSKNTRE HKSAFLLRTI 360 VLKTMRQYFK DNEYGNKPTT SFLSPSSPLH KPPVKPRTAR PGRSKLSLKA ANAGNPADKP 420 LSRAKKPSNV DSPSSMESLT LTKKSLSRKV GRTNASQRAE SATRGRKRSR AS

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MGAEVIEVWG TWEELLLGGA VLRHGTRDWN LVAAELRGRT VCPYTVTPEM CKAHYEDLQQ  60
RFYGCKAWFE ELRKQRMAEL KRALELSENS IGSLESKLET LKAERGDDCQ VDNDCSQTES  120
PVPCQKSDAV VCSSKETSKD GLSAGSFTRE TRTHWSPVTQ IPAAVAAEEM ETKTEGLLSS  180
EQGKVSSSEK ITAIVCGGQV GSLKKRRGKR KRKDCSRDVK EGSVGESDFL GVPDAKPVSR  240
RKENSTPVSG QFARSSGADD QSGSLRKDSI DDIKGVFESV AQNESAFVFR HRLDSQKRGR  300
YKKMILRHMD VDTIRSKISS HSIMSIKELF RDLLLLANNA VVFYSKNTRE HKSAFLLRTI  360
VLKTMRQYFK DNEYGNKPTT SFLSPSSPLH KPPVKPRTAR PGRSKLSLKA ANAGNPADKP  420
LSRAKKPSNV DSPSSMESLT LTKKSLSRKV GRTNASQRAE SATRGRKRSR AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	210	LKKRRGKR
2	204	209	KKRRGK
3	206	214	RRGKRKRKD
4	465	471	GRKRSRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	2e-19	MYB_related family protein