PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34283.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 489aa MW: 53200.7 Da PI: 6.4321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2e-05	380	417	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L GAY34283.1 380 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 417 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MAEEFQTGIC GGAWWINPTR SSSLSPCSAA GIGLSDHMGS FLWPSNDHFH MVDTKTTTLT 60 PAGTATTKFC EESANNNNNN NSVSADTSSM AFTQKHQQTD SDSGGSSSIL MDSTLQMMSL 120 VPSSSSSSTD CFQALLRGNG RAENNYRSMR LEDLNSQIQK EWSPSKSYAS SAGAGDHHQE 180 CFSLDQSHPV IKSATASFPD NCTVSESNCQ GLSPGFPVDS ASYGYTSALL QSYFEPQPQP 240 VQQQSLYSSN NTRSMGNYMS TANYGNNYNE VSPPWPKFAA ASFVKPSLPK QQQQQPSGGL 300 HFSNNTPFWN ATALNDISRP GGLLAAELGE KRTCPTFTAK YNNNEEVRDS GSAAKKGSSE 360 PAFKRPRIET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ 420 VSVLTTPYMK QGTQIPQQQS CDHKLKDPEA PKQDLNSRGL CLVPISSTFP VANETTADFW 480 TPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MAEEFQTGIC GGAWWINPTR SSSLSPCSAA GIGLSDHMGS FLWPSNDHFH MVDTKTTTLT  60
PAGTATTKFC EESANNNNNN NSVSADTSSM AFTQKHQQTD SDSGGSSSIL MDSTLQMMSL  120
VPSSSSSSTD CFQALLRGNG RAENNYRSMR LEDLNSQIQK EWSPSKSYAS SAGAGDHHQE  180
CFSLDQSHPV IKSATASFPD NCTVSESNCQ GLSPGFPVDS ASYGYTSALL QSYFEPQPQP  240
VQQQSLYSSN NTRSMGNYMS TANYGNNYNE VSPPWPKFAA ASFVKPSLPK QQQQQPSGGL  300
HFSNNTPFWN ATALNDISRP GGLLAAELGE KRTCPTFTAK YNNNEEVRDS GSAAKKGSSE  360
PAFKRPRIET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ  420
VSVLTTPYMK QGTQIPQQQS CDHKLKDPEA PKQDLNSRGL CLVPISSTFP VANETTADFW  480
TPTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	1e-60	bHLH family protein