PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY32085.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 386aa    MW: 44714.2 Da    PI: 7.1708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY32085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS112.27e-35143866374
        GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
                  + Aea++++++e a+ +  r++e   p gd  +Rl  +  + L+++  +      + l+ ++     s+    a+++ + + P  +f+h+ aN aIle
  GAY32085.1  14 KAYAEAMEAEKKEIAKVIARRINEKFCPIGDVRERLLYHSFQPLNKQAEN------NYLHQEA-----SKVFDEAFEAIYRMIPNGTFAHFRANMAILE 101
                 5679*******************************************999......3333333.....44555688899******************** PP

        GRAS 105 avege.ervHiiDfdisqGlQWpaLlqaLasRp.........egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 a+  + e +H++Dfd++ G+QWp+++ a+a+++         +++ +l++T ++ +e      s+ + eet++r ++ A + g++++ + +   +l+dl
  GAY32085.1 102 ALPYDaEVLHVVDFDMGDGVQWPSMITAIAQQQsllhqhgviSQQMKLKLTSIKWEEDYeresSQWRFEETKNRFHDCAYSHGLKLKVKEI---QLQDL 197
                 ***994555*********************9987887766666699********9776678889999***********************8...44444 PP

        GRAS 190 ..eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqe..adh.nsesFlerflealeyysalfd 269
                   e+++++ ++   +E +a n+++ l ++ +++ +++    ++L++ k+            +  ++++ + e   +  n + F   f + +++y al++
  GAY32085.1 198 vtEVKKMKKNSggkREWVAFNCMHGLPHMGRRRSKTH--VMQFLNMAKDYlaycansktskNRGIITFGDGEnwGKIrNLSCFGSFFESFMDHYQALLE 294
                 226777776668889**************95555544..4888888886422222222221445899999887656657777888788889******** PP

        GRAS 270 sleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                 s+e ++p+   ++ri +E  ++++ + ++   e+ +   + ++++  ++ +++  ++ v +s++  ++ak +++  +         ++++vl W++ pL
  GAY32085.1 295 SIEWNFPKGLaQARIAMECLFVAPFVDSLALLEEWK---EIKEFGDFQSGFGS--LQGVGFSNESLMEAKVMVKGEY---------ENEMVLEWRGSPL 379
                 ********9879999999998888888888888887...56668888888776..5788889999999999999888.........679********** PP

        GRAS 368 vsvSaWr 374
                 v v aWr
  GAY32085.1 380 VRVYAWR 386
                 ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MKIDNELSAR HLAKAYAEAM EAEKKEIAKV IARRINEKFC PIGDVRERLL YHSFQPLNKQ  60
AENNYLHQEA SKVFDEAFEA IYRMIPNGTF AHFRANMAIL EALPYDAEVL HVVDFDMGDG  120
VQWPSMITAI AQQQSLLHQH GVISQQMKLK LTSIKWEEDY ERESSQWRFE ETKNRFHDCA  180
YSHGLKLKVK EIQLQDLVTE VKKMKKNSGG KREWVAFNCM HGLPHMGRRR SKTHVMQFLN  240
MAKDYLAYCA NSKTSKNRGI ITFGDGENWG KIRNLSCFGS FFESFMDHYQ ALLESIEWNF  300
PKGLAQARIA MECLFVAPFV DSLALLEEWK EIKEFGDFQS GFGSLQGVGF SNESLMEAKV  360
MVKGEYENEM VLEWRGSPLV RVYAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-16GRAS family protein