PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126326.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 578aa MW: 65686.2 Da PI: 5.1918

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	296	316	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ XP_028126326.1 296 YCVVCGKKFKSEKQWKNHEQS 316 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MASLEKRCLY EVLGLPRDCT SDEIRSAYRK LALQRHPDKL VQSGLSSSAA TASFQELVNA 60 YEVLSDPRER TWYDSHRSQI LFSDSTNSNS NSNSIPDLFS FFSNSVFSGY SDSPKGFFNV 120 YADVFHKVYS NELNFAKKLG LGLEAVKEAP LMGNLQSPYN QVSAFYGYWL GFVTVMDFCW 180 VDQYDVMAGP NRKSRRVMEE ENKKVRKKAR REYNETVRGL AEFVKKRDKR VIDMQVKRNE 240 EMERKREEER EKKKEIERLK MERARAYEEP DWAKVEEIED DNDAIEEDEK NKKELYCVVC 300 GKKFKSEKQW KNHEQSKKHK EKVVELREAF GDEEIENERE EGKEEGELGD NGFVSADDGV 360 DEVTNQFGDS FRLQKQNRGD DEAQSIEEEG FVDIDDGGSS KGVNESFGSD DDDEEASFLE 420 AMVSGHKNKK NVNPAKSSTT KTHGKNDSDE MDFMAYNNLK STRRKRGARG ERGGRYDEET 480 TTTADATETS GQFGENNGRN DGSCEGETSS HAFVENESNG KGDDQLGKSN GKGDDQLVKS 540 HKVPKQPVDK KGMPKKDAAK KEVNAKSKNS SKGKKQKE

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MASLEKRCLY EVLGLPRDCT SDEIRSAYRK LALQRHPDKL VQSGLSSSAA TASFQELVNA  60
YEVLSDPRER TWYDSHRSQI LFSDSTNSNS NSNSIPDLFS FFSNSVFSGY SDSPKGFFNV  120
YADVFHKVYS NELNFAKKLG LGLEAVKEAP LMGNLQSPYN QVSAFYGYWL GFVTVMDFCW  180
VDQYDVMAGP NRKSRRVMEE ENKKVRKKAR REYNETVRGL AEFVKKRDKR VIDMQVKRNE  240
EMERKREEER EKKKEIERLK MERARAYEEP DWAKVEEIED DNDAIEEDEK NKKELYCVVC  300
GKKFKSEKQW KNHEQSKKHK EKVVELREAF GDEEIENERE EGKEEGELGD NGFVSADDGV  360
DEVTNQFGDS FRLQKQNRGD DEAQSIEEEG FVDIDDGGSS KGVNESFGSD DDDEEASFLE  420
AMVSGHKNKK NVNPAKSSTT KTHGKNDSDE MDFMAYNNLK STRRKRGARG ERGGRYDEET  480
TTTADATETS GQFGENNGRN DGSCEGETSS HAFVENESNG KGDDQLGKSN GKGDDQLVKS  540
HKVPKQPVDK KGMPKKDAAK KEVNAKSKNS SKGKKQKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	229	RKSRRVMEEENKKVRKKARREYNETVRGLAEFVKKRDK
2	203	211	KKVRKKARR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-143	C2H2 family protein