PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028125728.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 366aa    MW: 41747.8 Da    PI: 4.9938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028125728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.3e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C  G +CkF+H+
  XP_028125728.1  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                     6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MPPKQQSKAD MAKKQKVVED KTFGLKNKNK SKNVQKYVQN LQSSVQNKTD ASKIAAKKKK  60
EEEKAREKEL NDLFKIAVVQ PKVPPGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DEETMEDWDQ ETLEKVVESK KNEYNQNRPT EIVCKHFLDA VEKKQYGWFW  180
VCPNGGKECH YRHALPPGYV LKSQMKALLE EEANKMPIEE EIESQRAKVA TSTPMTPELF  240
LQWKKKHMDE REAGLAAQRA ERAKNDRMSG RELFLSDSSL FVDDAEAYEK YQREETDVSE  300
HKVQENLAAG PSTSTSVAVD SEEAMPDVDD DEDDDDELDL DELNELEASL SRTSIQISEP  360
GIKASS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-166C3H family protein