PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123634.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 321aa MW: 36038.7 Da PI: 6.0957

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123634.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl XP_028123634.1 14 RGLWTAEEDAKILAYVANHGIGNWTLVPHKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE++l++d++k G++ W++Ia+ ++ gRt++++k++w++ XP_028123634.1 68 DNFTPEEEQLILDYHKVIGSR-WSLIAQQLP-GRTDNDVKNYWNT 110 68*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MGRPPCCDKS NVKRGLWTAE EDAKILAYVA NHGIGNWTLV PHKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPEEEQLILD YHKVIGSRWS LIAQQLPGRT DNDVKNYWNT KLKKKLFKMG 120 IDPLTHKPFS QILSDYEKIA SLPVLNISTN MSSLVPIELS CITTINQPLP QQFISQETVQ 180 QHEVPSLTSS SSSSYSVTQL SSPRSFSCLS SPVPVAPSSP SSWCSEFLLG DPILSSDMDP 240 KQEHNLQVPL ITLQSNKPHY QFSEVAQERG CEAMYIGGQT ERYCSEAAST SSANSFVEAI 300 LDRDSEIQSE FPEVLNEYFS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	4e-77	MYB family protein