PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028123577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23883.7 Da PI: 6.7256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.6 | 1.9e-14 | 11 | 60 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kr+e + +r vtfskRr+g++ KA L L++a++a++ fs+ g+ y+ s XP_028123577.1 11 KRVEKEGQRMVTFSKRRHGLFNKARQLRSLTGADIAILTFSPAGRPYTHS 60 6889999**************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGSGKKKIEI KRVEKEGQRM VTFSKRRHGL FNKARQLRSL TGADIAILTF SPAGRPYTHS 60 EPSFDALVDR YLNTAAAGEK AEEGCEAAAA NHHRLSSWLD ALQFDASDSI EDLDSVTTPA 120 KDIWDFLKDR YQTTGLAHQY QLQNQLHQMR QESSQSINDF LSQMHSIWDQ LALSEPTWPH 180 REDAVLFTTY RNQQSYSVGF VYTTVTVVLQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-16 | M-type_MADS family protein |