PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028123560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 141aa MW: 15447.5 Da PI: 6.8007 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.5 | 8.6e-14 | 11 | 58 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 kr+e +r vtfskRr+g++ KA L L++a++a++ fs+ g+ y+ XP_028123560.1 11 KRVEKGGQRMVTFSKRRQGLFNKARQLRSLTGADIAILTFSPAGRPYT 58 57788889************************************9887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence |
MGSGKKKIEI KRVEKGGQRM VTFSKRRQGL FNKARQLRSL TGADIAILTF SPAGRPYTHG 60 EPSFDALVDR YLNTAAAGEK AEEGCEAAAA NHHRLSSWLD ALQFDASDSI EDLEILKKGL 120 EEIAAKVAEK IDDVFVDSLL V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 1e-21 | M-type_MADS family protein |