PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028122430.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 519aa MW: 54662.4 Da PI: 8.7147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028122430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028122430.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	13.9	0.00016	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_028122430.1 141 WKCERCSKKYAVQSDWKAHLKTC 163 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MVELENSSTV AVSAASGEVS VSSSGNQMAT TPPVLKKKRN LPGMPDPDAE VLALSPKTLM 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE IRKRVYVCPE PTCIHHDPRR 120 ALGDLTGIKK HFCRKHGEKK WKCERCSKKY AVQSDWKAHL KTCGTREYRC DCGTLFSRRD 180 SFFTHRAFCD ALAQESARAQ PLAIANSEEM LKVESVALSS SSPPPPPLTP STGVLSPVLS 240 IQSSAPENPS GIPPQQPVAA NLTIATASGS SSSSGNGANC SNSSVFASIF ASSTPSGVSQ 300 PSQSPSSFSD MLCAMAGPEH HQTEQPMSLS LSSSLYLSNN NPSSLFPTTS QSHHRQYTPT 360 QQPAALSATA LLQKAAQMGA TGSSSSFLRG LGLELQSSVD NQDTATARQW NNSHVVVKPE 420 SKSSVAAGLG LGLHTDGAAS GLTNLIMGPP SFYGNKPTTL DLLGLGIGAG GASTAGFSAL 480 FTSLGGGLDV EAAASFGGVN SSAEESWKGS SESKPSSLL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MVELENSSTV AVSAASGEVS VSSSGNQMAT TPPVLKKKRN LPGMPDPDAE VLALSPKTLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE IRKRVYVCPE PTCIHHDPRR  120
ALGDLTGIKK HFCRKHGEKK WKCERCSKKY AVQSDWKAHL KTCGTREYRC DCGTLFSRRD  180
SFFTHRAFCD ALAQESARAQ PLAIANSEEM LKVESVALSS SSPPPPPLTP STGVLSPVLS  240
IQSSAPENPS GIPPQQPVAA NLTIATASGS SSSSGNGANC SNSSVFASIF ASSTPSGVSQ  300
PSQSPSSFSD MLCAMAGPEH HQTEQPMSLS LSSSLYLSNN NPSSLFPTTS QSHHRQYTPT  360
QQPAALSATA LLQKAAQMGA TGSSSSFLRG LGLELQSSVD NQDTATARQW NNSHVVVKPE  420
SKSSVAAGLG LGLHTDGAAS GLTNLIMGPP SFYGNKPTTL DLLGLGIGAG GASTAGFSAL  480
FTSLGGGLDV EAAASFGGVN SSAEESWKGS SESKPSSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-114	C2H2 family protein