PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028122429.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 520aa MW: 54791.5 Da PI: 8.6025

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028122429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028122429.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	13.9	0.00016	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_028122429.1 141 WKCERCSKKYAVQSDWKAHLKTC 163 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MVELENSSTV AVSAASGEVS VSSSGNQMAT TPPVLKKKRN LPGMPDPDAE VLALSPKTLM 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE IRKRVYVCPE PTCIHHDPRR 120 ALGDLTGIKK HFCRKHGEKK WKCERCSKKY AVQSDWKAHL KTCGTREYRC DCGTLFSRRD 180 SFFTHRAFCD ALAQESARAQ PLAIANSEEM LKVESVALSS SSPPPPPLTP STGVLSPVLS 240 IQSSEAPENP SGIPPQQPVA ANLTIATASG SSSSSGNGAN CSNSSVFASI FASSTPSGVS 300 QPSQSPSSFS DMLCAMAGPE HHQTEQPMSL SLSSSLYLSN NNPSSLFPTT SQSHHRQYTP 360 TQQPAALSAT ALLQKAAQMG ATGSSSSFLR GLGLELQSSV DNQDTATARQ WNNSHVVVKP 420 ESKSSVAAGL GLGLHTDGAA SGLTNLIMGP PSFYGNKPTT LDLLGLGIGA GGASTAGFSA 480 LFTSLGGGLD VEAAASFGGV NSSAEESWKG SSESKPSSLL

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MVELENSSTV AVSAASGEVS VSSSGNQMAT TPPVLKKKRN LPGMPDPDAE VLALSPKTLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE IRKRVYVCPE PTCIHHDPRR  120
ALGDLTGIKK HFCRKHGEKK WKCERCSKKY AVQSDWKAHL KTCGTREYRC DCGTLFSRRD  180
SFFTHRAFCD ALAQESARAQ PLAIANSEEM LKVESVALSS SSPPPPPLTP STGVLSPVLS  240
IQSSEAPENP SGIPPQQPVA ANLTIATASG SSSSSGNGAN CSNSSVFASI FASSTPSGVS  300
QPSQSPSSFS DMLCAMAGPE HHQTEQPMSL SLSSSLYLSN NNPSSLFPTT SQSHHRQYTP  360
TQQPAALSAT ALLQKAAQMG ATGSSSSFLR GLGLELQSSV DNQDTATARQ WNNSHVVVKP  420
ESKSSVAAGL GLGLHTDGAA SGLTNLIMGP PSFYGNKPTT LDLLGLGIGA GGASTAGFSA  480
LFTSLGGGLD VEAAASFGGV NSSAEESWKG SSESKPSSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-114	C2H2 family protein