PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028118954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21622 Da PI: 8.8551 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 5.2e-18 | 12 | 61 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk vt+ kR+ ++KK ELS+LC+++v + f+++gk+ +++ XP_028118954.1 12 KRIENKKALRVTYKKRKDCVIKKTMELSILCGINVFTLCFGPNGKVDTWP 61 79***********************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MEDDEKGKKP MKRIENKKAL RVTYKKRKDC VIKKTMELSI LCGINVFTLC FGPNGKVDTW 60 PQNPNEVKAL IRMYKDSAKK SPLPRKFWWG NEDGYGWLDG LSAESVMSFL GKLDSKLEVL 120 KARIEFLKMV NEQKNSVVVM GKETENSTEF YQPQPQPQQQ DTQLNFEMEN LSMLLDLCYQ 180 YQSSIF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 28 | KKPMKRIENKKALRVTYKKRK |
2 | 20 | 28 | LRVTYKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-12 | M-type_MADS family protein |