PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118929.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 596aa MW: 66933.3 Da PI: 8.0155

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.5e-18	57	100	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++vk++ g++Wk+Ia+++ gRt+ qc +rwqk+l XP_028118929.1 57 WTEEEDNLLSEYVKKYNGRNWKKIAECLS-GRTDVQCLHRWQKVL 100 ***************************.**********986 PP
2	Myb_DNA-binding	57.8	2.6e-18	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l XP_028118929.1 106 KGPWTKDEDDCIIELVEKYGCKKWSVIAKFLP-GRIGKQCRERWHNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	51.2	3e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ +l +++k +G++ W+ ar ++ gRt++ +k++w+ XP_028118929.1 158 KEAWTKEEEAILTCYHKIYGNR-WAELARFLP-GRTDNAIKNHWN 200 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MIEVKKEEEY VMDLTKEVGL STFSPVSDSS GDTFTQRSPS SQALRKTTIR RSSQAGWTEE 60 EDNLLSEYVK KYNGRNWKKI AECLSGRTDV QCLHRWQKVL NPELVKGPWT KDEDDCIIEL 120 VEKYGCKKWS VIAKFLPGRI GKQCRERWHN HLDPAVKKEA WTKEEEAILT CYHKIYGNRW 180 AELARFLPGR TDNAIKNHWN CSVKKKWDLN LPPSLYSQFL AASPDFCSTE TKSVCAEVTV 240 DRHNLTEVSV DLSRGKEHVG DACSTELVLG NANLGENRLE SNPSMLGACR FSEAGLNKLI 300 SPLRRIQFNG TAIASRLTNE PSQGNDHHDI RGTFQASSSD DLVVASCSTK SSFTPLDVVL 360 PVTTEKTFES PKRQRGRDLD VVNLESRSLL DNSFLCLSTF GVREHNGHVS KKSRVDETHH 420 LDDKHFGCLC YKPPQLKDFV IPDENGGRCP SVENHVRRAN SQVHFSTPPD LALSISFNSS 480 SPESMLRNSA MSYKNTPSII RKRASREAGS GNYSVRNCTP ARMISCTSEA DFVNVKQDAH 540 SPFHRPKISV ADKSRERRLE CEFDKEWDSA VARCCTPVST SASSGLNFGA NMMLTP

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MIEVKKEEEY VMDLTKEVGL STFSPVSDSS GDTFTQRSPS SQALRKTTIR RSSQAGWTEE  60
EDNLLSEYVK KYNGRNWKKI AECLSGRTDV QCLHRWQKVL NPELVKGPWT KDEDDCIIEL  120
VEKYGCKKWS VIAKFLPGRI GKQCRERWHN HLDPAVKKEA WTKEEEAILT CYHKIYGNRW  180
AELARFLPGR TDNAIKNHWN CSVKKKWDLN LPPSLYSQFL AASPDFCSTE TKSVCAEVTV  240
DRHNLTEVSV DLSRGKEHVG DACSTELVLG NANLGENRLE SNPSMLGACR FSEAGLNKLI  300
SPLRRIQFNG TAIASRLTNE PSQGNDHHDI RGTFQASSSD DLVVASCSTK SSFTPLDVVL  360
PVTTEKTFES PKRQRGRDLD VVNLESRSLL DNSFLCLSTF GVREHNGHVS KKSRVDETHH  420
LDDKHFGCLC YKPPQLKDFV IPDENGGRCP SVENHVRRAN SQVHFSTPPD LALSISFNSS  480
SPESMLRNSA MSYKNTPSII RKRASREAGS GNYSVRNCTP ARMISCTSEA DFVNVKQDAH  540
SPFHRPKISV ADKSRERRLE CEFDKEWDSA VARCCTPVST SASSGLNFGA NMMLTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-81	MYB family protein