PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028118033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 39424.1 Da PI: 6.8338 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.4e-08 | 99 | 123 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_028118033.1 99 FKTKLCCKFRA-GTCPYITNCNFAHS 123 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.4e-06 | 173 | 198 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_028118033.1 173 YKGRHCKKFYTEEGCPYGDNCTFLHD 198 78888********************7 PP | |||||||
3 | zf-CCCH | 42.9 | 7.9e-14 | 239 | 264 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_028118033.1 239 WKTRICNKWEMTGYCPFGNKCHFAHG 264 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MDYGQESGFS GGNVVQVLTG PQSNGVGENW GSGSADQAVW ASEDDYRVWN REASVDTTSN 60 SDYDGRQLQT RSGSEPPNKK SRNSQSGDSR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF 120 AHSIEELRRP PPNWQEIVAA HEEERGVSSE PREEFQIPSL GSSGFSGETQ RSYKGRHCKK 180 FYTEEGCPYG DNCTFLHDEQ SKDRESVAIS LGPGSGGGYG GSASATASGS NSNVKPSNWK 240 TRICNKWEMT GYCPFGNKCH FAHGSQELHR YGGELMETET RDSSFAPPDV KLGAVPSRTL 300 ADTIVASVTS APHSDGYHIG VPSQRLSNVI QRTGQRPHQK WKGPDKISRI YGDWIDDFE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-127 | C3H family protein |