PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028118033.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 359aa    MW: 39424.1 Da    PI: 6.8338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028118033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-0899123126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_028118033.1  99 FKTKLCCKFRA-GTCPYITNCNFAHS 123
                     69*********.*************8 PP

2zf-CCCH18.63.4e-06173198126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_028118033.1 173 YKGRHCKKFYTEEGCPYGDNCTFLHD 198
                     78888********************7 PP

3zf-CCCH42.97.9e-14239264126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_028118033.1 239 WKTRICNKWEMTGYCPFGNKCHFAHG 264
                     8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MDYGQESGFS GGNVVQVLTG PQSNGVGENW GSGSADQAVW ASEDDYRVWN REASVDTTSN  60
SDYDGRQLQT RSGSEPPNKK SRNSQSGDSR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF  120
AHSIEELRRP PPNWQEIVAA HEEERGVSSE PREEFQIPSL GSSGFSGETQ RSYKGRHCKK  180
FYTEEGCPYG DNCTFLHDEQ SKDRESVAIS LGPGSGGGYG GSASATASGS NSNVKPSNWK  240
TRICNKWEMT GYCPFGNKCH FAHGSQELHR YGGELMETET RDSSFAPPDV KLGAVPSRTL  300
ADTIVASVTS APHSDGYHIG VPSQRLSNVI QRTGQRPHQK WKGPDKISRI YGDWIDDFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein