PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028117678.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 622aa MW: 69245.5 Da PI: 6.9677

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028117678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	3	24	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H XP_028117678.1 3 KCEKCSREFCSPINYRRHSRVH 24 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MQKCEKCSRE FCSPINYRRH SRVHRRSLNV NKESDKYRDL LRAFCDKLSL DEVKEIVSLK 60 DVTLEEVPGS SVIQALTSFI RKPGFCALPQ LYVKAGSALL DIIQARPSRL PISSQELFGI 120 LDDASERTFL CAGTAESVQR YVFDGEAGKI GLEMKNLVAC TSFLIEQKLV RAWFADKDAE 180 ALRCQKLLVE EEEAAQKRQA ELLERKRQKK LRQKEQKLKE QVNGETEDLK VPANTLNSSP 240 SAESSSSNTL ETLTDHVPSL LEPIQSSITE EDADTETQNG FSSEQSDSGT YSNVERQTAH 300 RSGRRILVIS RWQVPKSQRG GRNGFHANQN PQVLKTEPVQ KHGAPREARS AQVINGNKIW 360 TRKPKSENDG ENLKSRLQKE AVNQADQNCE VMIGSISVTL GSCTAQQPSD SLGEHAMSKY 420 SGDEKTVKSD SVQGVSNRSV VKLWRPVSRH ETRDPTPVQS DSGESREDII IRKGNYQPVS 480 SESCLRSYAL DGNGNESEDN NSHPLVEESV QPEDCPFSSH AAKAFLAYRW KEAIAADHVK 540 LVLAPESEPP GCPDTENDYQ VVIPSSDDHG RHVLGNAENL LDSTVALESM TTGTVKAKFR 600 TKPEKGIKIK YIPKQKQLTE GK

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MQKCEKCSRE FCSPINYRRH SRVHRRSLNV NKESDKYRDL LRAFCDKLSL DEVKEIVSLK  60
DVTLEEVPGS SVIQALTSFI RKPGFCALPQ LYVKAGSALL DIIQARPSRL PISSQELFGI  120
LDDASERTFL CAGTAESVQR YVFDGEAGKI GLEMKNLVAC TSFLIEQKLV RAWFADKDAE  180
ALRCQKLLVE EEEAAQKRQA ELLERKRQKK LRQKEQKLKE QVNGETEDLK VPANTLNSSP  240
SAESSSSNTL ETLTDHVPSL LEPIQSSITE EDADTETQNG FSSEQSDSGT YSNVERQTAH  300
RSGRRILVIS RWQVPKSQRG GRNGFHANQN PQVLKTEPVQ KHGAPREARS AQVINGNKIW  360
TRKPKSENDG ENLKSRLQKE AVNQADQNCE VMIGSISVTL GSCTAQQPSD SLGEHAMSKY  420
SGDEKTVKSD SVQGVSNRSV VKLWRPVSRH ETRDPTPVQS DSGESREDII IRKGNYQPVS  480
SESCLRSYAL DGNGNESEDN NSHPLVEESV QPEDCPFSSH AAKAFLAYRW KEAIAADHVK  540
LVLAPESEPP GCPDTENDYQ VVIPSSDDHG RHVLGNAENL LDSTVALESM TTGTVKAKFR  600
TKPEKGIKIK YIPKQKQLTE GK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	211	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-118	C2H2 family protein