PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116352.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 1278aa MW: 141898 Da PI: 8.6342

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	1162	1187	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L+ H r+ + XP_028116352.1 1162 YPCDveGCTMSFGSKQELVLHKRNvC 1187 899999****************9877 PP
2	zf-C2H2	13.7	0.00019	1186	1209	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_028116352.1 1186 VCPvkGCGKKFFSHKYLVQHRRVH 1209 69999*****************99 PP
3	zf-C2H2	12.1	0.0006	1245	1271	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_028116352.1 1245 YVCSesGCGQTFRFVSDFSRHKRKtgH 1271 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1278 aa Download sequence
MASIAVTAEQ PTTTEVFPWL KTLPLAPEYH PTLSEFQDPI AYIFKIEKEA SKYGICKIVP 60 PVSAPPKKTA IANLNRSLVV RSTISSPNSA PTFTTRQQQI GFCARKHRPV QKPVWXSGKN 120 YTLPQFEFKA KNFEKSYLKK TPKKGLSGLE VETLYWKASG DKPFEVEYAN DMPGSAFVPA 180 SVRNGKETGE GVNVGETAWN MRGVSRAKGS LLRFMKEEIP GVTSPMVYVA MMFSWFAWHV 240 EDHDLHSLNY LHTGAGKTWY GVPKEAAVAF EEVIRVHGYG GEINPLVTFA TLGKKTTVMS 300 PEVLISAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNIG EAANIATPEW LRVAKDAAIR 360 RASINCPPMV SHFQLLYDLA LSLCSGIPKS ISTKPRSSRL KDKKKGEGEA LIKELFVEDV 420 MRNNDLLHIL GEGSSIVLLP QNSLDVCSNL RVASQLKGSH RLPLGLCNPE EEMKASESLV 480 SENIMIDRKR GLKQFASFYP VKGKSSPMFD GSRLSFLSGS DDACTLASQT HKADAGRERT 540 AQGDRLSDQG LFSCITCGIL SFACVAIVQP REEAAHHLMS ADCRNFNNQD DGPGVTSDGL 600 TAAAILPELN SHSGWMQKST PDGLFDVPVQ SSDRIQTVHQ STEVVSNTET QKTTSALGLL 660 ALNYGNSSDS EEEAVEADIP LFDSEIKSRD CSPGSSLQCD DTGLPSLKRH SEATGCHRLA 720 FDDDVPHQVI DSYVDDGHPR SNFMGKYRTF DYSVEFETDN TAFMESNSVG SWSRHQMKLS 780 PSASNGSPVA HRGVTGISNV VSPFENTTMS FAPRSDEDSS RLHVFCLQHA AEVEQRLRPI 840 GGAHILLLCH PDYPELEAEA KLVAEELGID YFWNDIAIRD ANKEDEERIQ LALESEEAMH 900 GNGDWAVKLG INLFYSVNLS RSPLYSKQIP YNSIIYKAFG RLTKLKVHGK GFGKQKKIVV 960 AGKWCGKVWM SNQVHPLLAE KDAEEEEEEE EEERSFHARA KPDVKRERLS ESTHSAETTS 1020 VTRKTGKKRK NKTEGAAFKK AKFPKIEDSG VASDGSPEEG YQKRTRNLRN KQVKTETPRP 1080 QRSSNSNTRK FDSCVEDELD GGPSTRLRKR TTKPAKELVE KPIESKPVLK KPTNSKKAKK 1140 PPAVKATTSH SNVKVRDVEG EYPCDVEGCT MSFGSKQELV LHKRNVCPVK GCGKKFFSHK 1200 YLVQHRRVHM DDRPLKCPWK GCKMTFKWAW ARTEHIRVHT GERPYVCSES GCGQTFRFVS 1260 DFSRHKRKTG HLGKKGRG

Sequence ? help Back to Top

Protein Sequence Length: 1278 aa Download sequence

MASIAVTAEQ PTTTEVFPWL KTLPLAPEYH PTLSEFQDPI AYIFKIEKEA SKYGICKIVP  60
PVSAPPKKTA IANLNRSLVV RSTISSPNSA PTFTTRQQQI GFCARKHRPV QKPVWXSGKN  120
YTLPQFEFKA KNFEKSYLKK TPKKGLSGLE VETLYWKASG DKPFEVEYAN DMPGSAFVPA  180
SVRNGKETGE GVNVGETAWN MRGVSRAKGS LLRFMKEEIP GVTSPMVYVA MMFSWFAWHV  240
EDHDLHSLNY LHTGAGKTWY GVPKEAAVAF EEVIRVHGYG GEINPLVTFA TLGKKTTVMS  300
PEVLISAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNIG EAANIATPEW LRVAKDAAIR  360
RASINCPPMV SHFQLLYDLA LSLCSGIPKS ISTKPRSSRL KDKKKGEGEA LIKELFVEDV  420
MRNNDLLHIL GEGSSIVLLP QNSLDVCSNL RVASQLKGSH RLPLGLCNPE EEMKASESLV  480
SENIMIDRKR GLKQFASFYP VKGKSSPMFD GSRLSFLSGS DDACTLASQT HKADAGRERT  540
AQGDRLSDQG LFSCITCGIL SFACVAIVQP REEAAHHLMS ADCRNFNNQD DGPGVTSDGL  600
TAAAILPELN SHSGWMQKST PDGLFDVPVQ SSDRIQTVHQ STEVVSNTET QKTTSALGLL  660
ALNYGNSSDS EEEAVEADIP LFDSEIKSRD CSPGSSLQCD DTGLPSLKRH SEATGCHRLA  720
FDDDVPHQVI DSYVDDGHPR SNFMGKYRTF DYSVEFETDN TAFMESNSVG SWSRHQMKLS  780
PSASNGSPVA HRGVTGISNV VSPFENTTMS FAPRSDEDSS RLHVFCLQHA AEVEQRLRPI  840
GGAHILLLCH PDYPELEAEA KLVAEELGID YFWNDIAIRD ANKEDEERIQ LALESEEAMH  900
GNGDWAVKLG INLFYSVNLS RSPLYSKQIP YNSIIYKAFG RLTKLKVHGK GFGKQKKIVV  960
AGKWCGKVWM SNQVHPLLAE KDAEEEEEEE EEERSFHARA KPDVKRERLS ESTHSAETTS  1020
VTRKTGKKRK NKTEGAAFKK AKFPKIEDSG VASDGSPEEG YQKRTRNLRN KQVKTETPRP  1080
QRSSNSNTRK FDSCVEDELD GGPSTRLRKR TTKPAKELVE KPIESKPVLK KPTNSKKAKK  1140
PPAVKATTSH SNVKVRDVEG EYPCDVEGCT MSFGSKQELV LHKRNVCPVK GCGKKFFSHK  1200
YLVQHRRVHM DDRPLKCPWK GCKMTFKWAW ARTEHIRVHT GERPYVCSES GCGQTFRFVS  1260
DFSRHKRKTG HLGKKGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein