PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116351.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 1268aa MW: 140629 Da PI: 8.3262

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	1152	1177	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF ++ +L H r+ + XP_028116351.1 1152 YQCDveGCTMSFGSRQELALHKRNvC 1177 99********************9877 PP
2	zf-C2H2	13.6	0.0002	1176	1199	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H XP_028116351.1 1176 VCPvkGCGKKFFSHKYLVQHRRVH 1199 69999*****************99 PP
3	zf-C2H2	12.1	0.0006	1235	1261	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_028116351.1 1235 YVCSesGCGQTFRFVSDFSRHKRKtgH 1261 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1268 aa Download sequence
MASIAVTAEQ PTTTEVFPWL KSLPLAPEYH PTLVEFQDPI AYIFKIEKEA SQYGICKIVP 60 PVSAPPKKTV IVNLNRSLAA RSTIPSPNSA PTFTTRQQQI GFCPRKHRPV QKPVWQSGEN 120 YTLPQFEVKA KAFEKGYLKK TPKKGLSGLE VETLYWKASG DKPFQVEYAN DMPGSAFVPV 180 SVRNGKETGE GVNVGETAWN MRGVSRAKGS LLRFMKEEIP GVTSPMVYVA MMFSWFAWHV 240 EDHDLHSLNY LHTGAGKTWY GVPREAAVAF EEVIRVHGYG GEINPLVTFA ILGEKTTVMS 300 PEVLISAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNIG EAANIATPEW LRVAKDAAIR 360 RASINCPPMV SHFQLLYDLA LSLCSGIPKS ISTKPRSSRL KDKKKGEGET LIKELFVEDV 420 MRNNDLLHIL GEGSSIVLLP QNSLDDSVCS NLRAASRLKG NHRLPLGLCN PEEEMKASES 480 LVSENIMIDR KRGLKQFASF YPVKGKFSPM FDGSRLSLLG GSDDACTLAS QTHKADAGRE 540 RTAQGDRLSD QGLFSCVTCG ILSFACVAIV QPREEAAHHL MSAQGDGLTV ATAAAILPEL 600 NSQSGWMRKS TPDGLFDVPV QSADRIQTVH QTTEVVSNTE TQKTTSALGL LALNYGNSSD 660 SEEEEEVEAR IPVYDSETKS RDFPPESGFQ CDNMGLSSPK HHSEATGCGL GFVDDVPQQV 720 IDCYVDDGPP KSNFRGKYQT FDCSVEFETE NIASMESNSV GSWSRHQMKL SPSVSNGSPV 780 AHRCVTGISN VVSPFENTTM SFALRSDEDS SRLHVFCLQH AAEVEQRLRP IGGAHILLLC 840 HPDYPELETE AKLVAEELGI DYFWNDIAIR DATKEDEERI QLALESEEAV HGNGDWAVKL 900 GINLYYSVNL SRSPLYSKQI PYNSIIYKAF GRLTKPKVHG KGFSKQKKIV VAGKWCGKVW 960 MSNQVHPLLA EKDTEEEEEE EEEERSLHAR AKPDVKHERL SGSTHTAETT SATRKTGKKR 1020 KNKTGCGAIR KAKFPKIEAS GIASDGSPED GYQKRTRNLR NKQVKTETPH PQKSSDCNTK 1080 FDLCVEDELD GGPSTRLRKR TLKPAKELVE KPIESKPVLK KLTSSRKAKN PPAVKATTAH 1140 SNMKVRDEEG EYQCDVEGCT MSFGSRQELA LHKRNVCPVK GCGKKFFSHK YLVQHRRVHM 1200 DDRPLKCPWK GCKMTFKWAW ARTEHIRVHT GERPYVCSES GCGQTFRFVS DFSRHKRKTG 1260 HLGKKGRG

Sequence ? help Back to Top

Protein Sequence Length: 1268 aa Download sequence

MASIAVTAEQ PTTTEVFPWL KSLPLAPEYH PTLVEFQDPI AYIFKIEKEA SQYGICKIVP  60
PVSAPPKKTV IVNLNRSLAA RSTIPSPNSA PTFTTRQQQI GFCPRKHRPV QKPVWQSGEN  120
YTLPQFEVKA KAFEKGYLKK TPKKGLSGLE VETLYWKASG DKPFQVEYAN DMPGSAFVPV  180
SVRNGKETGE GVNVGETAWN MRGVSRAKGS LLRFMKEEIP GVTSPMVYVA MMFSWFAWHV  240
EDHDLHSLNY LHTGAGKTWY GVPREAAVAF EEVIRVHGYG GEINPLVTFA ILGEKTTVMS  300
PEVLISAGVP CCRLVQNAGE FVVTFPRAYH SGFSHGFNIG EAANIATPEW LRVAKDAAIR  360
RASINCPPMV SHFQLLYDLA LSLCSGIPKS ISTKPRSSRL KDKKKGEGET LIKELFVEDV  420
MRNNDLLHIL GEGSSIVLLP QNSLDDSVCS NLRAASRLKG NHRLPLGLCN PEEEMKASES  480
LVSENIMIDR KRGLKQFASF YPVKGKFSPM FDGSRLSLLG GSDDACTLAS QTHKADAGRE  540
RTAQGDRLSD QGLFSCVTCG ILSFACVAIV QPREEAAHHL MSAQGDGLTV ATAAAILPEL  600
NSQSGWMRKS TPDGLFDVPV QSADRIQTVH QTTEVVSNTE TQKTTSALGL LALNYGNSSD  660
SEEEEEVEAR IPVYDSETKS RDFPPESGFQ CDNMGLSSPK HHSEATGCGL GFVDDVPQQV  720
IDCYVDDGPP KSNFRGKYQT FDCSVEFETE NIASMESNSV GSWSRHQMKL SPSVSNGSPV  780
AHRCVTGISN VVSPFENTTM SFALRSDEDS SRLHVFCLQH AAEVEQRLRP IGGAHILLLC  840
HPDYPELETE AKLVAEELGI DYFWNDIAIR DATKEDEERI QLALESEEAV HGNGDWAVKL  900
GINLYYSVNL SRSPLYSKQI PYNSIIYKAF GRLTKPKVHG KGFSKQKKIV VAGKWCGKVW  960
MSNQVHPLLA EKDTEEEEEE EEEERSLHAR AKPDVKHERL SGSTHTAETT SATRKTGKKR  1020
KNKTGCGAIR KAKFPKIEAS GIASDGSPED GYQKRTRNLR NKQVKTETPH PQKSSDCNTK  1080
FDLCVEDELD GGPSTRLRKR TLKPAKELVE KPIESKPVLK KLTSSRKAKN PPAVKATTAH  1140
SNMKVRDEEG EYQCDVEGCT MSFGSRQELA LHKRNVCPVK GCGKKFFSHK YLVQHRRVHM  1200
DDRPLKCPWK GCKMTFKWAW ARTEHIRVHT GERPYVCSES GCGQTFRFVS DFSRHKRKTG  1260
HLGKKGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein