PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028116350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 164aa MW: 17779.1 Da PI: 8.2856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.8e-10 | 44 | 70 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Cky + CkF+H++ XP_028116350.1 44 PGQPECSYFLKTGDCKYRSGCKFHHPK 70 5789*********************96 PP | |||||||
2 | zf-CCCH | 37 | 5.8e-12 | 94 | 117 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++ r+G+Ck+G+ CkF H+ XP_028116350.1 94 QNICSHYNRYGICKFGPACKFDHP 117 679********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MAPVYPTPVR SLPTPPAFLN TPADANFYTH HTQPMLVDEF PERPGQPECS YFLKTGDCKY 60 RSGCKFHHPK NRMPKTAASA LTLSDKGLPL RPDQNICSHY NRYGICKFGP ACKFDHPVNC 120 GPSDSSALSG PDKPSPSGNS ATTYGARMVV GGDNGSEALI QQHV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 4e-44 | C3H family protein |