PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115652.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRAS

Protein Properties

Length: 444aa MW: 51610.8 Da PI: 5.2282

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	103.1	4e-32	135	359	3	235
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +l+ + ea+++g+ +l + +++r+se +sp g m R y+ + ++ +++s + laa+ +f++++P+ kf+h++ XP_028115652.1 135 HLIKAYREAIDEGQIQLSEVIVKRISEKVSPVGGVMDRFLYYLFQSFDKQADY----------LRQES---NNNFLAAFMTFYQIFPYGKFAHFA 216 666677799*********************************999998876..........33333...56899999************ PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl.vakr 185 aN+aIl+a+ ++ e +Hii fd+++G+QWp++++a+ ++++ +l++T v+ +e + s + et++ L + A+++ v++ +++ +++ XP_028115652.1 217 ANRAILQAMPHDvELIHIINFDMGEGIQWPSMIEAIGWQQRKEIRLKLTSVKWSEGDsecspSPWRFAETRRWLCDHAQAFCVKLTVDTMeLHDL 311 *****9998999********************************977668898888999******************833334 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 ++++++ + + +++E l+ n++l+l ++ +v ++ +++L++ k+l XP_028115652.1 312 VNEMKTMKRNGRRREWLVFNCMLRLPHMG--RVRSRRDLSKFLRVAKELL 359 4444444555555***********8..5555555799*999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MNTTMQPKFL QSPWPFFNNV SSPFLFNEFG DFGLAMDVDM DDYNRDFCPP FITTEDYSLD 60 KSKISTFPSP TTLLDEFSDP QVHVKDSDTW LPEDDFSIAV EDFGIEVLSK SPEKSEESLQ 120 LTLPTENMEI NNVIHLIKAY REAIDEGQIQ LSEVIVKRIS EKVSPVGGVM DRFLYYLFQS 180 FDKQADYLRQ ESNNNFLAAF MTFYQIFPYG KFAHFAANRA ILQAMPHDVE LIHIINFDMG 240 EGIQWPSMIE AIGWQQRKEI RLKLTSVKWS EGDSECSPSP WRFAETRRWL CDHAQAFCVK 300 LTVDTMELHD LVNEMKTMKR NGRRREWLVF NCMLRLPHMG RVRSRRDLSK FLRVAKELLA 360 YVTNRNFDRK SFSTQNPIIE LDVGSISCEN IVFSFMIRSC ARRRTDFDNM GIIAFGDGDV 420 WVNPKISSSF GSFLDGHLVH YKLY

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MNTTMQPKFL QSPWPFFNNV SSPFLFNEFG DFGLAMDVDM DDYNRDFCPP FITTEDYSLD  60
KSKISTFPSP TTLLDEFSDP QVHVKDSDTW LPEDDFSIAV EDFGIEVLSK SPEKSEESLQ  120
LTLPTENMEI NNVIHLIKAY REAIDEGQIQ LSEVIVKRIS EKVSPVGGVM DRFLYYLFQS  180
FDKQADYLRQ ESNNNFLAAF MTFYQIFPYG KFAHFAANRA ILQAMPHDVE LIHIINFDMG  240
EGIQWPSMIE AIGWQQRKEI RLKLTSVKWS EGDSECSPSP WRFAETRRWL CDHAQAFCVK  300
LTVDTMELHD LVNEMKTMKR NGRRREWLVF NCMLRLPHMG RVRSRRDLSK FLRVAKELLA  360
YVTNRNFDRK SFSTQNPIIE LDVGSISCEN IVFSFMIRSC ARRRTDFDNM GIIAFGDGDV  420
WVNPKISSSF GSFLDGHLVH YKLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	4e-17	GRAS family protein