PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028115465.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19432.4 Da    PI: 10.6973
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028115465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-18957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie+k +rq+tf+k r g++KK  EL+ LC++++avi fs+ g+ + +
  XP_028115465.1  9 KRIEDKARRQTTFTKCRDGLFKKTGELCNLCGTKAAVITFSNAGNTFAF 57
                    79*****************************************987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MGRRRVEIKR IEDKARRQTT FTKCRDGLFK KTGELCNLCG TKAAVITFSN AGNTFAFGNP  60
SVDSILDRYL SMTSSSSRAS MDGGELAAAE RVREREERLA EALARLEVEK KRGEAIDEAL  120
SMLKLNEDVV GDSKVRASEE MGRFGVRWRW LNWKRRRSMM RLLMRCWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22M-type_MADS family protein