PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028115464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23274.1 Da PI: 4.7606 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.6 | 1e-20 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+k +rq+tf+kRr g++KK EL+ LC++e+avi fs+ g+ + + XP_028115464.1 9 KRIEDKARRQTTFTKRRDGLFKKTGELCNLCGTEAAVITFSNAGNTFAF 57 79*****************************************987665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MGRRRVEIKR IEDKARRQTT FTKRRDGLFK KTGELCNLCG TEAAVITFSN AGNTFAFGNP 60 SVDSVLDRYL SMTSSSSRAS VDGGEVAAAE RVREREERLA EALARLEVEK KRGEAIDEAL 120 SMLKLNEDVV VGDSKVRASE EMGEIRSAVE MAQLEAEKKH DEVVDEMLTM LNAKAEASRL 180 KEVEQEVGMD VDEETTELQI GNKSQRGDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-25 | M-type_MADS family protein |