PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115194.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 420aa MW: 47287.8 Da PI: 8.9312

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	8e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WTteE+e l +v+++G+g Wk I + R+ ++k++w++ XP_028115194.1 5 KQKWTTEEEEALRAGVAKHGTGKWKNILKDPDfalslSQRSNIDLKDKWRN 55 79*********************************89*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MGNQKQKWTT EEEEALRAGV AKHGTGKWKN ILKDPDFALS LSQRSNIDLK DKWRNMGIST 60 AAHSSKEKIR IPRVKAITAG PLTNGQNSAS ASLIDDDKDG KTAPRWKKNL NYVIAFAKDG 120 VYDVTKRYSR KWHEVLSRRN ITTDPILSII LSNIRRECRQ SFASQVISAL EDQDRNEAEA 180 LERELHSKDD ASISLPGRQS GDKEWRMSRS EFGSDEICFP SSSCCPARKC IDEHVTKIYN 240 AFCPIISQFV EKSCSKSRAV EVLLFFKQML INLKNSPFRT RRTSINPVSN GAQHLFLQML 300 PSFDQLFDAL SLNSELDASG RVDIYLAADP VRTSIALPVL FHALDDVIHN VNMCNNFNKN 360 SLSWPLQKLN RIYSGLVLAS GEELSFGIAL LSTNFRSHLH LTELECQSGK NQMVPEVKVV

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MGNQKQKWTT EEEEALRAGV AKHGTGKWKN ILKDPDFALS LSQRSNIDLK DKWRNMGIST  60
AAHSSKEKIR IPRVKAITAG PLTNGQNSAS ASLIDDDKDG KTAPRWKKNL NYVIAFAKDG  120
VYDVTKRYSR KWHEVLSRRN ITTDPILSII LSNIRRECRQ SFASQVISAL EDQDRNEAEA  180
LERELHSKDD ASISLPGRQS GDKEWRMSRS EFGSDEICFP SSSCCPARKC IDEHVTKIYN  240
AFCPIISQFV EKSCSKSRAV EVLLFFKQML INLKNSPFRT RRTSINPVSN GAQHLFLQML  300
PSFDQLFDAL SLNSELDASG RVDIYLAADP VRTSIALPVL FHALDDVIHN VNMCNNFNKN  360
SLSWPLQKLN RIYSGLVLAS GEELSFGIAL LSTNFRSHLH LTELECQSGK NQMVPEVKVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	1e-30	MYB_related family protein