PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028114682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27208.7 Da PI: 9.8745 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.8 | 2.5e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR++g++KK +ELS+LC+++ + ii+s+ XP_028114682.1 10 FITNDSARKATYKKRKKGLMKKVSELSTLCGIDTCAIIYSP 50 89*************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MTRKKVKLAF ITNDSARKAT YKKRKKGLMK KVSELSTLCG IDTCAIIYSP YEFQPEVWPN 60 TLAVQRVLAQ FKRMPEMEQS KKMVSQESFI RQRIVKANEH LKKQLKDNRE KEMTEVMYQC 120 LTGRGLQNLV IADLHDLGWL IDQKLEEIDK KIESMKKKPL SDVSMAPMTS RSTNEMRQDQ 180 KPNLDLAMVA MQRPQWFNEW MNHPNDHMGF GGDEMVMPFG DNHNAMWSSV FFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAFITNDSARKATYKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-61 | M-type_MADS family protein |