PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114369.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25483.4 Da    PI: 5.298
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF572.5e-181261150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk    vt+ kR+  ++KK  ELS+LCd++v  + f+++g++ +++
  XP_028114369.1 12 KRIENKKALRVTYKKRKDCVIKKTMELSILCDINVFTLCFGPNGEVDTWP 61
                    79***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEDDEKGKKP MKRIENKKAL RVTYKKRKDC VIKKTMELSI LCDINVFTLC FGPNGEVDTW  60
PQNPNEVKAL IKMYKESAKK SPVRKTCESS FSDCCLGAEK VAKKVLVGNE DGYGWLDGLS  120
AESAMSFLGK LESKLEVLKA RIEFLKMMKE QKNRGAVVMR KETEETSCWF DDTNLQKNRG  180
VIVMGKETEE ACWFDDTSAI DNFEEDDLAM LLDLCHQYEL GIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1828KKPMKRIENKKALRVTYKKRK
22028LRVTYKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.11e-14MIKC_MADS family protein