PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114021.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 405aa MW: 46965.6 Da PI: 9.3184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	160	183	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg+ F +++ L++H + H XP_028114021.1 160 YVCRVCGRNFYTNDKLVNHFKQiH 183 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MQGNRGGRGP FFYQIEKDFV KFHLGMVGFV EICKIFHSIQ SRKLQTLTPY FALYRYCHFE 60 PNPNFNLSNP AVSLGQKIPQ NNVAIFWDLD NKPPKSFPPY EAAIRLKRAV AEFGAVRYTG 120 AYANRHAFSY VPPEVREKRK DRKALNQLEN KGIIKRVEPY VCRVCGRNFY TNDKLVNHFK 180 QIHEREQMKR LNQIESARGK RRVNLVAKFS MKMEKYKNAS RDVLTPKVGY GLVDELKQAG 240 FWVRTVSDRP QAADIALRNH MVDMMDRRQV ECVVLVSDDS DFVEVLKEAR LRCFNTVVVG 300 DSNDGALKRT ADAAFSWQEI MMGKAKKEAV SVVGRWKDRD VLKRLEWTYD PERDRKLYGL 360 DDEFDVESWD SEIEGSSSGE DDNCLQKEDK NMWWALESNA DVKSL

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MQGNRGGRGP FFYQIEKDFV KFHLGMVGFV EICKIFHSIQ SRKLQTLTPY FALYRYCHFE  60
PNPNFNLSNP AVSLGQKIPQ NNVAIFWDLD NKPPKSFPPY EAAIRLKRAV AEFGAVRYTG  120
AYANRHAFSY VPPEVREKRK DRKALNQLEN KGIIKRVEPY VCRVCGRNFY TNDKLVNHFK  180
QIHEREQMKR LNQIESARGK RRVNLVAKFS MKMEKYKNAS RDVLTPKVGY GLVDELKQAG  240
FWVRTVSDRP QAADIALRNH MVDMMDRRQV ECVVLVSDDS DFVEVLKEAR LRCFNTVVVG  300
DSNDGALKRT ADAAFSWQEI MMGKAKKEAV SVVGRWKDRD VLKRLEWTYD PERDRKLYGL  360
DDEFDVESWD SEIEGSSSGE DDNCLQKEDK NMWWALESNA DVKSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-144	C2H2 family protein