PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028114017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C2H2 | ||||||||
Protein Properties | Length: 405aa MW: 46965.6 Da PI: 9.3184 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 160 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg+ F +++ L++H + H XP_028114017.1 160 YVCRVCGRNFYTNDKLVNHFKQiH 183 9******************98766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence |
MQGNRGGRGP FFYQIEKDFV KFHLGMVGFV EICKIFHSIQ SRKLQTLTPY FALYRYCHFE 60 PNPNFNLSNP AVSLGQKIPQ NNVAIFWDLD NKPPKSFPPY EAAIRLKRAV AEFGAVRYTG 120 AYANRHAFSY VPPEVREKRK DRKALNQLEN KGIIKRVEPY VCRVCGRNFY TNDKLVNHFK 180 QIHEREQMKR LNQIESARGK RRVNLVAKFS MKMEKYKNAS RDVLTPKVGY GLVDELKQAG 240 FWVRTVSDRP QAADIALRNH MVDMMDRRQV ECVVLVSDDS DFVEVLKEAR LRCFNTVVVG 300 DSNDGALKRT ADAAFSWQEI MMGKAKKEAV SVVGRWKDRD VLKRLEWTYD PERDRKLYGL 360 DDEFDVESWD SEIEGSSSGE DDNCLQKEDK NMWWALESNA DVKSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-144 | C2H2 family protein |