PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028113425.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 295aa    MW: 34316.9 Da    PI: 8.3174
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028113425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.3e-17444343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+vtf kR++g+ KK +EL +LCd+ev+ ii++++
  XP_028113425.1  4 IRNDKTRYVTFQKRKKGLKKKTYELKTLCDVEVCWIIYGPK 44
                    89*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MELIRNDKTR YVTFQKRKKG LKKKTYELKT LCDVEVCWII YGPKINDRPT DDQAEIWPPN  60
PDVIQHLIDT YKNLSSEDRT RRTLGLSNFF EERNQKIEDT LVKLRKKNDE ARYSTWDDRY  120
NGLSKEQLRE FESVLEGKLQ DVKARVAFMK GIDQKLSIAC IDDNSHTQTI QNQSYFMHGG  180
MFGTEVDNDI ANLQYYFNHA QVYANSKANP MMMTTMMPRN NNQYYNKLGG VCSSNFMCNP  240
LDRPIYYDPM MLENAIVNNP LPPVGYCNPS IQTTSLSSSV HASQLDKYYK PGNFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-11M-type_MADS family protein