PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028113062.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 618aa    MW: 67332.5 Da    PI: 5.183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028113062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4386.8e-1342436051374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r+++    +y    p ++   ++s++l++   f+e++P+lkf+h
  XP_028113062.1 243 LVHTLMACAEAVQQDNLKLADALVKHIGLLAVSQAGAMRKVATYFAEALARRIYK----IY----PHDSL--DTSDVLQM--HFYETCPYLKFAH 325
                     689***************************************************9....44....22222..24444443..4************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++    +  +La++Ae++gv+fef+ +va++l+dl+
  XP_028113062.1 326 FTANQAILEAFAGATRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDFFLCLXGKLAQLAETIGVEFEFRGFVANSLADLD 420
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.ee 281
                      + L+++p   E++aVn+v++lhrll++++++++    vL+ +  ++Pk+v+vveqea+hn++ F +rf eal+yys++fdsl +++l + + ++
  XP_028113062.1 421 ASILDIRPseVETVAVNSVFELHRLLARPGAIDK----VLSSIEAMRPKIVTVVEQEASHNGAIFTDRFNEALHYYSTMFDSLeSSGLTQPKnSQ 511
                     ********8889**************99999988....*********************************************555555444499 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++++lgr+i+nvvaceg+er+erhe+l++Wr+r+++aGF p++l+++a  qa++ll+ ++ +dgyrvee+sg+l+lgW++rpL+++SaW+
  XP_028113062.1 512 DVVMSEVYLGRQICNVVACEGTERVERHESLSQWRNRMSSAGFDPAHLGSNAFRQASMLLALFAgGDGYRVEENSGCLLLGWHTRPLIATSAWQ 605
                     *********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MKRNRDRDRD RERDKGESSS MGAEKGKMWQ DHPDDGICGG GGGGMDELLE VLGYKVKSSD  60
MADVAQKLEQ LEMVMGTAPD DGISHLLCDT VHYNPSDLSG WVQSMLSELN NASPLAAAFD  120
VGHNHSVVVD DSLLLPGDSS TITGTGTGTG TTTTTTTRTP TTIDFATPQL QQQSRIYEDN  180
SEYDLSAIPG GAICKHKENS RRENGNNKRI KTVSIRSDDH QSEIGAGARP VVLVDSQEAG  240
VRLVHTLMAC AEAVQQDNLK LADALVKHIG LLAVSQAGAM RKVATYFAEA LARRIYKIYP  300
HDSLDTSDVL QMHFYETCPY LKFAHFTANQ AILEAFAGAT RVHVIDFSLK QGMQWPALMQ  360
ALALRPGGPP AFRLTGIGPP QPDNTDFFLC LXGKLAQLAE TIGVEFEFRG FVANSLADLD  420
ASILDIRPSE VETVAVNSVF ELHRLLARPG AIDKVLSSIE AMRPKIVTVV EQEASHNGAI  480
FTDRFNEALH YYSTMFDSLE SSGLTQPKNS QDVVMSEVYL GRQICNVVAC EGTERVERHE  540
SLSQWRNRMS SAGFDPAHLG SNAFRQASML LALFAGGDGY RVEENSGCLL LGWHTRPLIA  600
TSAWQLATTT ESSTLNSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313RNRDRDRDRER
2315RNRDRDRDRERDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein