PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028112256.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 472aa MW: 52514 Da PI: 8.4462

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028112256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	87	105	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cgk F ++ L H++ XP_028112256.1 87 CRECGKGFQSWKALFGHMK 105 9*****************7 PP
2	zf-C2H2	12.7	0.00037	382	404	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H XP_028112256.1 382 HECPICFKVFSSGQALGGHKRSH 404 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MEEDQEFKHS CKFCNKSFPC GRSLGGHMRS HVINSSVETD EKLTKKKLSS INNGENNASY 60 GLRENPKKTC RFARSNGEDA MFHDKLCREC GKGFQSWKAL FGHMKCHSER FSSNSAVEVI 120 DSQSDNETAG AAPNRKKRSR RMKMTRYNNN NIATTTTTTS SSVSEIEHEQ EEVAMCLMML 180 SRDVGSKFNG LSSVTESSDN NFELLEAGSS IFPRKIAKRG IMNSWSDCGE AVKFKKLRNG 240 KLGSKILDSI SQLDTNQSDC VEKLFSRNGS KLNKSDFEAS EVELGKDLML DQAEKQSKFE 300 CTTCNKTFHS YQALGGHRAS HKKIKGCFAS KIDSSPENSF ETTEITPTPN PIHEIKSTNK 360 KNPIEQETST SICVSKKSKG QHECPICFKV FSSGQALGGH KRSHLIGASS EAKNNQSSGV 420 VIQKPISEIR DLLDLNLPAP VEEDSGRVHV EFKPWWVESN HKHEAMVGLI SN

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MEEDQEFKHS CKFCNKSFPC GRSLGGHMRS HVINSSVETD EKLTKKKLSS INNGENNASY  60
GLRENPKKTC RFARSNGEDA MFHDKLCREC GKGFQSWKAL FGHMKCHSER FSSNSAVEVI  120
DSQSDNETAG AAPNRKKRSR RMKMTRYNNN NIATTTTTTS SSVSEIEHEQ EEVAMCLMML  180
SRDVGSKFNG LSSVTESSDN NFELLEAGSS IFPRKIAKRG IMNSWSDCGE AVKFKKLRNG  240
KLGSKILDSI SQLDTNQSDC VEKLFSRNGS KLNKSDFEAS EVELGKDLML DQAEKQSKFE  300
CTTCNKTFHS YQALGGHRAS HKKIKGCFAS KIDSSPENSF ETTEITPTPN PIHEIKSTNK  360
KNPIEQETST SICVSKKSKG QHECPICFKV FSSGQALGGH KRSHLIGASS EAKNNQSSGV  420
VIQKPISEIR DLLDLNLPAP VEEDSGRVHV EFKPWWVESN HKHEAMVGLI SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	9e-61	C2H2 family protein