PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028112176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 37238.4 Da PI: 7.2887 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 191 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_028112176.1 191 YQPDICKDYKETGYCGYGDSCKFMHD 216 67789********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MADSSEPQNQ PEPVCNFFRK PSKNKNIRKR TFDENEDEAE AEDTKTESSL IHNKKKPPQP 60 DNKLHFSTGP SKRSMPSESN VESTTPIFQF ESSKEIQVQN DSRATATLET ETEFGKDARA 120 IRERVLKQAE TALKGKSKNP GDEKLYKGIH GYTDYKAGFR REQTVSAEKA GGSHGPLRAS 180 AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DEAEKARKRN 240 LAMGGDDMDE GTADHSDEDD EDALPFACFI CRQPFVDPVV TRCRHYFCEH CALKHHAKNK 300 KCFVCNKPTN GIFNTAHEIK KKMAAEGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-165 | C3H family protein |