PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028112176.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 328aa    MW: 37238.4 Da    PI: 7.2887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028112176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12191216126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_028112176.1 191 YQPDICKDYKETGYCGYGDSCKFMHD 216
                     67789********************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MADSSEPQNQ PEPVCNFFRK PSKNKNIRKR TFDENEDEAE AEDTKTESSL IHNKKKPPQP  60
DNKLHFSTGP SKRSMPSESN VESTTPIFQF ESSKEIQVQN DSRATATLET ETEFGKDARA  120
IRERVLKQAE TALKGKSKNP GDEKLYKGIH GYTDYKAGFR REQTVSAEKA GGSHGPLRAS  180
AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW DEAEKARKRN  240
LAMGGDDMDE GTADHSDEDD EDALPFACFI CRQPFVDPVV TRCRHYFCEH CALKHHAKNK  300
KCFVCNKPTN GIFNTAHEIK KKMAAEGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-165C3H family protein